ANALYSIS PROJECT INFORMATION | |
---|---|
GOLD Analysis Project ID
![]() |
Ga0568765 |
Analysis Project Name |
Metatranscriptome of lake water microbial communities from Sandhills, Nebraska, United States - NSL_Island_2018 (Metagenome Metatranscriptome) |
Analysis Project Name Stem |
Metatranscriptome of lake water microbial communities from Sandhills, Nebraska, United States - NSL_Island_2018 |
Analysis Project Name Suffix
![]() |
|
Analysis Project Type
![]() |
Metatranscriptome Analysis |
IMG Submission ID
![]() |
284911 |
Completion Status |
Complete |
IMG Completion Date
![]() |
2022-10-06 |
PI | Eric Wommack |
Analysis Project Description
![]() |
|
Visibility | Public |
ANALYSIS PROJECT METADATA | |
Assembly Method
(MIGS-30)
![]() |
MEGAHIT v. 1.2.9 |
Scaffold Count
![]() |
165779 |
Contig Count
![]() |
|
Gene Calling Method
(MIGS-32)
![]() |
|
Gene Count |
208825 |
Estimated Size |
93145126 |
Sequencing Depth
(MIGS-31.1)
![]() |
|
Genbank Anomalous Assembly |
|
Genbank Anomalous Reason |
|
Annotation Pipeline |
IMG Annotation Pipeline v.5.1.11 |
Added By | JGI automated process on 2022-07-25 |
Last Modified By | JGI automated process on 2022-10-06 |
ORF Comparison Tools
![]() |
|
PROJECT EXTERNAL REFERENCES | |
IMG Taxon ID
![]() |
3300057144 |
IMG RNA-Seq ID |
|
Genbank Accession
![]() |
|
Genbank Release Date |
|
SRA Runs |
|
ANALYSIS PROJECT COMPOSITION | |
Study |
Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean |
Number of Studies
![]() |
1 |
Number of Biosamples
![]() |
1 |
Number of Projects
![]() |
1 |
Number of Related Analysis Projects
![]() |
1 |
JGI INFORMATION | |
JGI Data Utilization Status
![]() |
Unrestricted |
ITS Analysis Project ID
![]() |
1334956 (Portal) |
ITS Analysis Project Name
![]() |
NSL_Island_2018_MT Annotation |
ITS Analysis Product Name
![]() |
Metagenome Metatranscriptome |
ITS Version Number |
1 |
Library Names
![]() |
NNPGY |
JGI Award DOI
![]() |
10.46936/10.25585/60000489 |
You are going to add the following user to your analysis project, project, biosample and study.
Contact Name/Email: Do you want to continue?
You are going to remove permissions for the following user to your analysis project, project, biosample and study.
Contact Name/Email: Do you want to continue?
Changing the AP visibility will also change visibility on the following items:
Do you want to continue with this visibility change?
Changing the AP visibility will also change downgrade visibility on the following items:
Do you want to continue with this visibility change?