Studies
|
56,334 |
|
Biosamples
|
196,988 |
|
Sequencing Projects
|
525,360 |
|
Analysis Projects
|
384,991 |
| Organisms | 484,221 |
| ANALYSIS PROJECT INFORMATION | |
|---|---|
|
GOLD Analysis Project ID
|
Ga0568765 |
| Analysis Project Name |
Metatranscriptome of lake water microbial communities from Sandhills, Nebraska, United States - NSL_Island_2018 (Metagenome Metatranscriptome) |
| Analysis Project Name Stem |
Metatranscriptome of lake water microbial communities from Sandhills, Nebraska, United States - NSL_Island_2018 |
|
Analysis Project Name Suffix
|
|
|
Analysis Project Type
|
Metatranscriptome Analysis |
|
IMG Submission ID
|
284911 |
| Completion Status |
Complete |
|
IMG Completion Date
|
2022-10-06 |
| PI | Eric Wommack |
|
Analysis Project Description
|
|
| Visibility | Public |
| ANALYSIS PROJECT METADATA | |
|
Assembly Method
(MIGS-30)
|
MEGAHIT v. 1.2.9 |
|
Scaffold Count
|
165779 |
|
Contig Count
|
|
|
Gene Calling Method
(MIGS-32)
|
|
| Gene Count |
208825 |
| Estimated Size |
93145126 |
|
Sequencing Depth
(MIGS-31.1)
|
|
| Genbank Anomalous Assembly |
|
| Genbank Anomalous Reason |
|
| Annotation Pipeline |
IMG Annotation Pipeline v.5.1.11 |
| Added By | JGI automated process on 2022-07-25 |
| Last Modified By | JGI automated process on 2022-10-06 |
|
ORF Comparison Tools
|
|
| PROJECT EXTERNAL REFERENCES | |
|
IMG Taxon ID
|
3300057144 |
| IMG RNA-Seq ID |
|
|
Genbank Accession
|
|
| Genbank Release Date |
|
| SRA Runs |
|
| ANALYSIS PROJECT COMPOSITION | |
| Study |
Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean |
|
Number of Studies
|
1 |
|
Number of Biosamples
|
1 |
|
Number of Projects
|
1 |
|
Number of Related Analysis Projects
|
1 |
| JGI INFORMATION | |
|
JGI Data Utilization Status
|
Unrestricted |
|
ITS Analysis Project ID
|
1334956 (Portal) |
|
ITS Analysis Project Name
|
NSL_Island_2018_MT Annotation |
|
ITS Analysis Product Name
|
Metagenome Metatranscriptome |
| ITS Version Number |
1 |
|
Library Names
|
NNPGY |
|
JGI Award DOI
|
10.46936/10.25585/60000489 |
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