ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0568765
Analysis Project Name Metatranscriptome of lake water microbial communities from Sandhills, Nebraska, United States - NSL_Island_2018 (Metagenome Metatranscriptome)
Analysis Project Name Stem Metatranscriptome of lake water microbial communities from Sandhills, Nebraska, United States - NSL_Island_2018
Analysis Project Name Suffix
Analysis Project Type Metatranscriptome Analysis
IMG Submission ID 284911
Completion Status Complete
IMG Completion Date 2022-10-06
PI Eric Wommack
Analysis Project Description
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) MEGAHIT v. 1.2.9
Scaffold Count 165779
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 208825
Estimated Size 93145126
Sequencing Depth (MIGS-31.1)
Genbank Anomalous Assembly
Genbank Anomalous Reason
Annotation Pipeline IMG Annotation Pipeline v.5.1.11
Added By JGI automated process on 2022-07-25
Last Modified By JGI automated process on 2022-10-06
ORF Comparison Tools
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 3300057144
IMG RNA-Seq ID
Genbank Accession
Genbank Release Date
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean
Number of Studies 1
Number of Biosamples 1
Number of Projects 1
Number of Related Analysis Projects 1
JGI INFORMATION
JGI Data Utilization Status Unrestricted
ITS Analysis Project ID 1334956 (Portal)
ITS Analysis Project Name NSL_Island_2018_MT Annotation
ITS Analysis Product Name Metagenome Metatranscriptome
ITS Version Number 1
Library Names NNPGY
JGI Award DOI 10.46936/10.25585/60000489

 

 

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