Studies
|
47,510 |
|
Biosamples
|
122,171 |
|
Sequencing Projects
|
392,175 |
|
Analysis Projects
|
311,866 |
| Organisms | 403,926 |
| ANALYSIS PROJECT INFORMATION | |
|---|---|
|
GOLD Analysis Project ID
|
Ga0453263 |
| Analysis Project Name Prefix |
Metatranscriptome of plant tissue microbial communities from Arabidopsis thaliana in University of Tennessee, Knoxville, TN, United States - Col0_38E_2 |
|
Analysis Project Name Suffix
|
|
|
Analysis Project Type
|
Metatranscriptome Analysis |
|
IMG Submission ID
|
245066 |
| Completion Status |
Complete |
|
IMG Completion Date
|
2020-12-11 |
| PI | Sarah Lebeis |
|
Analysis Project Description
|
|
| Visibility | Public |
| ANALYSIS PROJECT METADATA | |
|
Assembly Method
(MIGS-30)
|
megahit v. 2020-11-26 18:58:39 - MEGAHIT v1.2.9 |
|
Scaffold Count
|
33185 |
|
Contig Count
|
|
|
Gene Calling Method
(MIGS-32)
|
|
| Gene Count |
50356 |
| Estimated Size |
40118526 |
|
Sequencing Depth
(MIGS-31.1)
|
|
| Annotation Pipeline |
IMG Annotation Pipeline v.5.0.20 |
| Added By |
JGI automated process
on 2020-08-28 |
| Last Modified By |
JGI automated process
on 2020-12-14 |
|
ORF Comparison Tools
|
|
|
16S Recovered
|
|
|
16S Recovery Software
|
|
| PROJECT EXTERNAL REFERENCES | |
|
IMG Taxon ID
|
3300042415 |
| IMG RNA-Seq ID |
|
|
Genbank Accession
|
|
| Genbank Release Date |
|
| SRA Runs |
|
| ANALYSIS PROJECT COMPOSITION | |
| Study |
Aquatic microbiome from duckweeds obtained from Rutgers Duckweed Stock Cooperative (RDSC) |
|
Number of Studies
|
1 |
|
Number of Biosamples
|
1 |
|
Number of Projects
|
1 |
|
Number of Related Analysis Projects
|
1 |
| JGI INFORMATION | |
|
ITS Analysis Project ID
|
1279033 (Portal) |
|
ITS Analysis Project Name
|
Col0_38E_2 Annotation |
|
ITS Analysis Product Name
|
Metagenome Metatranscriptome |
| ITS Version Number |
1 |
You are going to add the following user to your analysis project, project, biosample and study.
Contact Name/Email: Do you want to continue?
You are going to remove permissions for the following user to your analysis project, project, biosample and study.
Contact Name/Email: Do you want to continue?
Changing the AP visibility will also change visibility on the following items:
Do you want to continue with this visibility change?
Changing the AP visibility will also change downgrade visibility on the following items:
Do you want to continue with this visibility change?
