ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0439453
Analysis Project Name Prefix Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z062817_5195
Analysis Project Name Suffix
Analysis Project Type Metagenome Analysis
IMG Submission ID 239072
Completion Status Complete
IMG Completion Date 2020-09-06
PI Daniel Schachtman
PI Name
Analysis Project Description
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) metaspades v. 3.14.1
Scaffold Count 1097564
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 1271638
Estimated Size 459628464
Sequencing Depth (MIGS-31.1)
Annotation Pipeline IMG Annotation Pipeline v.5.0.19
Added By JGI automated process on 2020-06-27
Last Modified By JGI automated process on 2020-11-06
ORF Comparison Tools
16S Recovered
16S Recovery Software
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 3300041408
Genbank Accession
Assembly Accession
Genbank Release Date
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Sorghum-associated microbial communities from plants grown in Nebraska, USA
Number of Studies 1
Number of Biosamples 1
Number of Projects 1
Number of Related Analysis Projects 0
Derived Analysis Projects (DAP) 0
JGI INFORMATION
ITS Analysis Project ID 1275348 (Portal)
ITS Analysis Project Name CC0113LE14Z062817_5195
ITS Analysis Product Name Metagenome Minimal Draft
ITS Version Number 1

 

 

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