ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0395996
Analysis Project Name Prefix Metatranscriptome of bovine rumen microbial communities from Lethbridge, Alberta, Canada - Rumen RJG_06
Analysis Project Name Suffix
Analysis Project Type Metatranscriptome Analysis
IMG Submission ID 226773
Completion Status Complete
IMG Completion Date 2020-02-29
PI Graeme Attwood
Description
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) megahit v. MEGAHIT v1.1.2
Scaffold Count 345022
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 430849
Estimated Size 241824631
Sequencing Depth (MIGS-31.1)
Annotation Pipeline IMG Annotation Pipeline v.5.0.11
Added By JGI automated process on 2019-08-14
Last Modified By JGI automated process on 2020-03-03
Non-SP-Owner AP No
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 3300037691
IMG RNA-Seq ID
Genbank Accession
Assembly Accession
Genbank Release Date
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Rumen microbial communities from sheep, dairy cows and beef cattle from various locations
Number of Studies 1
Number of Biosamples 1
Number of Projects 1
Number of Related Analysis Projects 2
JGI INFORMATION
ITS Analysis Project ID 1257513 (Portal)
ITS Analysis Project Name Rumen RJG_06 RNA Annotation NovaSeq
ITS Analysis Product Name Metagenome Metatranscriptome
ITS Version Number

 

 

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