ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0372808
Analysis Project Name Prefix Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE5
Analysis Project Name Suffix
Analysis Project Type Metatranscriptome Analysis
IMG Submission ID 218906
Completion Status Incomplete
IMG Completion Date
PI Petr Baldrian
Description
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) megahit v. MEGAHIT v1.1.2
IMG Decontamination
IMG Decontamination Method
GenePRIMP
Scaffold Count
Contig Count
Gene Calling Method (MIGS-32)
Gene Count
Estimated Size
Sequencing Depth (MIGS-31.1)
Annotation Pipeline IMG Annotation Pipeline v.5.0.3
Added By JGI automated process on 2019-02-22
Last Modified By JGI automated process on 2019-10-06
Non-SP-Owner AP No
PROJECT EXTERNAL REFERENCES
IMG Taxon ID
IMG RNA-Seq ID
Genbank
Assembly Accession
Genbank Release Date
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Soil, plant litter and rhizosphere microbial communities from European coniferous forests
Number of Studies 1
Number of Biosamples 1
Number of Projects 1
Number of Related Analysis Projects 2
Derived Analysis Projects 1
JGI INFORMATION
ITS Analysis Project ID 1205444 (Portal)
ITS Analysis Project Name NRE5 metatranscriptome Annotation
ITS Analysis Product Name Metagenome Metatranscriptome
ITS NCBI Taxon ID
ITS Version Number

 

 

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