ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0370548
Analysis Project Name Prefix Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_123
Analysis Project Name Suffix
Analysis Project Type Metatranscriptome Analysis
IMG Submission ID 211224
Completion Status Complete
IMG Completion Date 2019-06-30
PI Eoin Brodie
Description
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) megahit v. MEGAHIT v1.1.2
IMG Decontamination
IMG Decontamination Method
GenePRIMP
Scaffold Count 460442
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 541650
Estimated Size 231651856
Sequencing Depth (MIGS-31.1)
Annotation Pipeline IMG Annotation Pipeline v.5.0.1
Added By JGI automated process on 2019-02-07
Last Modified By JGI automated process on 2019-08-29
Non-SP-Owner AP No
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 3300034644
IMG RNA-Seq ID
Genbank
Assembly Accession
Genbank Release Date
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States
Number of Studies 1
Number of Biosamples 1
Number of Projects 1
Number of Related Analysis Projects 1
Derived Analysis Projects 1
JGI INFORMATION
ITS Analysis Project ID 1238161 (Portal)
ITS Analysis Project Name ER_RNA_123 Annotation
ITS Analysis Product Name Metagenome Metatranscriptome
ITS NCBI Taxon ID
ITS Version Number

 

 

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