ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0352983
Analysis Project Name Metatranscriptome of cow rumen rumen associated fungal communities from Illinois, USA - Cow X-3 switchgrass (Eukaryote Metatranscriptome)
Analysis Project Name Stem Metatranscriptome of cow rumen rumen associated fungal communities from Illinois, USA - Cow X-3 switchgrass
Analysis Project Name Suffix
Analysis Project Type Metatranscriptome Analysis
IMG Submission ID 205936
Completion Status Complete
IMG Completion Date 2019-01-16
PI Matthias Hess
Analysis Project Description
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) rnnotator v. 3.3.2
Scaffold Count 97240
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 115274
Estimated Size 53939285
Sequencing Depth (MIGS-31.1)
Genbank Anomalous Assembly
Genbank Anomalous Reason
Annotation Pipeline IMG Annotation Pipeline v.4.16.6
Added By JGI automated process on 2019-01-10
Last Modified By JGI automated process on 2021-12-08
ORF Comparison Tools
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 3300032541
IMG RNA-Seq ID
Genbank Accession
Genbank Release Date
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis
Number of Studies 1
Number of Biosamples 1
Number of Projects 1
Number of Related Analysis Projects 7
JGI INFORMATION
JGI Data Utilization Status Restricted
ITS Analysis Project ID 1044480 (Portal)
ITS Analysis Project Name AP Cow rumen Metatranscriptome - Cow X-3 switchgrass1401920896594
ITS Analysis Product Name Eukaryote Metatranscriptome
ITS Version Number 1
Library Names UWZZ
JGI Award DOI