ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0339084
Analysis Project Name Prefix Histophilus somni 3605HS
Analysis Project Name Suffix
Analysis Project Type Genome Analysis (Isolate)
IMG Submission ID 224511
Completion Status Complete
IMG Completion Date 2019-12-17
PI
Analysis Project Description Submitting a public genome from NCBI/GenBank to IMG for analysis.
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) SPAdes v. 3.5.0
IMG Decontamination No
IMG Decontamination Method
Scaffold Count 300
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 2486
Estimated Size 2368610
Sequencing Depth (MIGS-31.1) 56.9x
Annotation Pipeline IMG Annotation Pipeline v.5.0.9
Added By JGI automated process on 2019-01-01
Last Modified By JGI automated process on 2020-01-08
ORF Comparison Tools
16S Recovered
16S Recovery Software
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 2845769375
Genbank Accession
Genbank ID LQGE00000000 (GCA_001931025.1)
Release Date 2017-04-06
NCBI Genbank Version LQGE01
Genbank Release Date 2017-04-06
ANALYSIS PROJECT COMPOSITION
Study Bovine respiratory disease (BRD) relevant bacteria
Number of Studies 1
Number of Projects 1
Number of Related Analysis Projects 0

 

 

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