ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0325380
Analysis Project Name Prefix Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day9_8
Analysis Project Name Suffix
Analysis Project Type Metatranscriptome Analysis
IMG Submission ID 205692
Completion Status Complete
IMG Completion Date 2019-01-10
PI Steven W. Singer
Analysis Project Description
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) megahit v. MEGAHIT v1.1.2
Scaffold Count 31739
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 50129
Estimated Size 29527620
Sequencing Depth (MIGS-31.1)
Annotation Pipeline IMG Annotation Pipeline v.4.16.6
Added By JGI automated process on 2018-11-08
Last Modified By JGI automated process on 2021-11-07
ORF Comparison Tools
16S Recovered
16S Recovery Software
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 3300032448
IMG RNA-Seq ID
Genbank Accession
Genbank Release Date
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States
Number of Studies 1
Number of Biosamples 1
Number of Projects 1
Number of Related Analysis Projects 3
JGI INFORMATION
JGI Data Utilization Status Unrestricted
ITS Analysis Project ID 1224786 (Portal)
ITS Analysis Project Name SM_Day9_8 metatranscriptome Annotation
ITS Analysis Product Name Metagenome Metatranscriptome
ITS Version Number 1

 

 

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