ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0310836
Analysis Project Name Prefix Sorghum-adapted microbial communities enriched on stacked mutant (SM) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - SM_Day14_4
Analysis Project Name Suffix
Analysis Project Type Metagenome Analysis
IMG Submission ID 201310
Completion Status Complete
IMG Completion Date 2018-10-31
PI Steven W. Singer
Analysis Project Description
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) spades v. 3.12.0
Scaffold Count 94935
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 214798
Estimated Size 150428370
Sequencing Depth (MIGS-31.1)
Annotation Pipeline IMG Annotation Pipeline v.4.16.5
Added By JGI automated process on 2018-08-25
Last Modified By JGI automated process on 2021-09-16
ORF Comparison Tools
16S Recovered
16S Recovery Software
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 3300031183
IMG Metagenome bin count 10
IMG Predicted viruses 28
Genbank Accession
Genbank Release Date
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States
Number of Studies 1
Number of Biosamples 1
Number of Projects 1
Number of Related Analysis Projects 2
Derived Analysis Projects (DAP) 0
JGI INFORMATION
ITS Analysis Project ID 1204024 (Portal)
ITS Analysis Project Name SM_Day14_4 metagenome
ITS Analysis Product Name Metagenome Minimal Draft
ITS Version Number 1

 

 

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