Studies
|
49,826 |
|
Biosamples
|
146,961 |
|
Sequencing Projects
|
434,501 |
|
Analysis Projects
|
326,537 |
| Organisms | 417,407 |
| ANALYSIS PROJECT INFORMATION | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
GOLD Analysis Project ID
|
Ga0272034 |
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| Analysis Project Name Prefix |
Shigella boydii ATCC 8700 |
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|
Analysis Project Name Suffix
|
|
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|
Analysis Project Type
|
Genome Analysis (Isolate) |
||||||||||||||||||
|
IMG Submission ID
|
226296 | ||||||||||||||||||
| Completion Status |
Complete |
||||||||||||||||||
|
IMG Completion Date
|
2020-01-09 |
||||||||||||||||||
| PI | |||||||||||||||||||
|
Analysis Project Description
|
Submitting a public genome from NCBI/GenBank to IMG for analysis. |
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| Visibility | Public | ||||||||||||||||||
| ANALYSIS PROJECT METADATA | |||||||||||||||||||
|
Assembly Method
(MIGS-30)
|
HGAP v. 3 |
||||||||||||||||||
|
IMG Decontamination
|
No |
||||||||||||||||||
|
IMG Decontamination Method
|
|
||||||||||||||||||
|
Scaffold Count
|
3 |
||||||||||||||||||
|
Contig Count
|
3 |
||||||||||||||||||
|
Gene Calling Method
(MIGS-32)
|
|
||||||||||||||||||
| Gene Count |
5529 |
||||||||||||||||||
| Estimated Size |
4525323 |
||||||||||||||||||
|
Sequencing Depth
(MIGS-31.1)
|
36.0x |
||||||||||||||||||
| Annotation Pipeline |
IMG Annotation Pipeline v.5.0.9 |
||||||||||||||||||
| Added By |
JGI automated process
on 2018-04-30 |
||||||||||||||||||
| Last Modified By |
JGI automated process
on 2020-01-21 |
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|
ORF Comparison Tools
|
|
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|
16S Recovered
|
|
||||||||||||||||||
|
16S Recovery Software
|
|
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| PROJECT EXTERNAL REFERENCES | |||||||||||||||||||
|
IMG Taxon ID
|
2850761752 |
||||||||||||||||||
| IMG Metagenome bin count |
|
||||||||||||||||||
| IMG Predicted viruses |
|
||||||||||||||||||
|
Genbank Accession
|
|
||||||||||||||||||
| Genbank Release Date |
2018-02-23 |
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| ANALYSIS PROJECT COMPOSITION | |||||||||||||||||||
| Study |
Genome Sequences of Shiga Toxin-Producing Escherichia coli Isolates |
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|
Number of Studies
|
1 |
||||||||||||||||||
|
Number of Projects
|
1 |
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|
Number of Related Analysis Projects
|
0 |
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