ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0255028
Analysis Project Name Prefix Metatranscriptome of freshwater microbial communities from Pennsylvania, United States - DR:GLUT
Analysis Project Name Suffix
Analysis Project Type Metatranscriptome Analysis
IMG Submission ID 178168
Completion Status Complete
IMG Completion Date 2018-01-27
PI Regina Lamendella
Description
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) megahit v. MEGAHIT v1.1.2
Scaffold Count 29944
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 52937
Estimated Size 30228324
Sequencing Depth (MIGS-31.1)
Annotation Pipeline IMG Annotation Pipeline v.4.16.0
Added By JGI automated process on 2018-01-26
Last Modified By JGI automated process on 2019-10-06
Non-SP-Owner AP No
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 3300022749
IMG RNA-Seq ID
Genbank Accession
Assembly Accession
Genbank Release Date
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking
Number of Studies 1
Number of Biosamples 1
Number of Projects 1
Number of Related Analysis Projects 1
JGI INFORMATION
ITS Analysis Project ID 1154650 (Portal)
ITS Analysis Project Name DR:GLUT_MetaT Annotation
ITS Analysis Product Name Metagenome Metatranscriptome
ITS Version Number 1

 

 

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