Studies
|
54,050 |
|
Biosamples
|
174,371 |
|
Sequencing Projects
|
485,175 |
|
Analysis Projects
|
368,782 |
| Organisms | 468,042 |
| ANALYSIS PROJECT INFORMATION | |
|---|---|
|
GOLD Analysis Project ID
|
Ga0209947 |
| Analysis Project Name |
Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_B_D2_MG (SPAdes) |
| Analysis Project Name Stem |
Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_B_D2_MG |
|
Analysis Project Name Suffix
|
(SPAdes) |
|
Analysis Project Type
|
Metagenome Analysis |
|
IMG Submission ID
|
185706 |
| Completion Status |
Complete |
|
IMG Completion Date
|
2018-04-17 |
| PI | Susannah Tringe |
|
Analysis Project Description
|
|
| Visibility | Public |
| ANALYSIS PROJECT METADATA | |
|
Assembly Method
(MIGS-30)
|
spades v. 3.11.1 |
|
Scaffold Count
|
812557 |
|
Contig Count
|
|
|
Gene Calling Method
(MIGS-32)
|
|
| Gene Count |
1188274 |
| Estimated Size |
607470149 |
|
Sequencing Depth
(MIGS-31.1)
|
|
| Genbank Anomalous Assembly |
|
| Genbank Anomalous Reason |
|
| Annotation Pipeline |
IMG Annotation Pipeline v.4.16.2 |
| Added By |
JGI automated process
on 2017-08-13 |
| Last Modified By |
JGI automated process
on 2022-06-18 |
|
ORF Comparison Tools
|
|
| PROJECT EXTERNAL REFERENCES | |
|
IMG Taxon ID
|
3300026251 |
| IMG Metagenome bin count |
15 |
| IMG Predicted viruses |
17 |
|
Genbank Accession
|
|
| Genbank Release Date |
|
| SRA Runs |
|
| ANALYSIS PROJECT COMPOSITION | |
| Study |
Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. |
|
Number of Studies
|
1 |
|
Number of Biosamples
|
1 |
|
Number of Projects
|
1 |
|
Number of Related Analysis Projects
|
1 |
|
Derived Analysis Projects (DAP)
|
1 |
| JGI INFORMATION | |
|
JGI Data Utilization Status
|
Unrestricted |
|
ITS Analysis Project ID
|
1166463 (Portal) |
|
ITS Analysis Project Name
|
Salt Pond MetaG R2_B_D2_MG (SPAdes) |
|
ITS Analysis Product Name
|
Metagenome Minimal Draft |
| ITS Version Number |
2 |
|
JGI Award DOI
|
10.46936/10.25585/60000820 |
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