Studies
|
56,290 |
|
Biosamples
|
195,545 |
|
Sequencing Projects
|
523,554 |
|
Analysis Projects
|
381,673 |
| Organisms | 484,046 |
| ANALYSIS PROJECT INFORMATION | |
|---|---|
|
GOLD Analysis Project ID
|
Ga0190931 |
| Analysis Project Name |
Pseudomonadales bacterium SCGC AG-487_E03 (contamination screened) |
| Analysis Project Name Stem |
Pseudomonadales bacterium SCGC AG-487_E03 |
|
Analysis Project Name Suffix
|
|
|
Analysis Project Type
|
Single Cell Analysis (screened) |
|
IMG Submission ID
|
131470 |
| Completion Status |
Complete |
|
IMG Completion Date
|
2017-05-30 |
| PI | Frank Stewart |
|
Analysis Project Description
|
|
|
Contamination Screening Method
|
|
| Visibility | Public |
| ANALYSIS PROJECT METADATA | |
|
Assembly Method
(MIGS-30)
|
spades v. 3.9.0 |
|
IMG Decontamination
|
Yes |
|
IMG Decontamination Method
|
PhiX decontamination |
|
Number of tRNAs
|
|
|
tRNA Software
|
|
|
Completeness Strategy
|
|
|
Scaffold Count
|
36 |
|
Contig Count
|
|
|
Gene Calling Method
(MIGS-32)
|
|
| Gene Count |
916 |
| Estimated Size |
951921 |
|
Sequencing Depth
(MIGS-31.1)
|
|
| Genbank Anomalous Assembly |
|
| Genbank Anomalous Reason |
|
| Annotation Pipeline |
IMG Annotation Pipeline v.4.15.1 |
| Added By | JGI automated process on 2017-05-22 |
| Last Modified By | JGI automated process on 2023-02-08 |
|
ORF Comparison Tools
|
|
|
16S Recovered
|
|
|
16S Recovery Software
|
|
| PROJECT EXTERNAL REFERENCES | |
|
IMG Taxon ID
|
2734482376 |
|
Genbank Accession
|
|
| Genbank Release Date |
|
| ANALYSIS PROJECT COMPOSITION | |
| Study |
Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones |
|
Number of Studies
|
1 |
|
Number of Projects
|
1 |
|
Number of Related Analysis Projects
|
1 |
| JGI INFORMATION | |
|
JGI Data Utilization Status
|
Unrestricted |
|
ITS Analysis Project ID
|
1127968 (Portal) |
|
ITS Analysis Project Name
|
Pseudomonadales bacterium SCGC AG-487_E03 Screened |
|
ITS Analysis Product Name
|
Microbial Minimal Draft Single Cell Screened Genome |
| ITS Version Number |
1 |
|
Library Names
|
BUHZG |
|
JGI Award DOI
|
10.46936/10.25585/60000893 |
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