ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0153913
Analysis Project Name Prefix Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaT
Analysis Project Name Suffix
Analysis Project Type Metatranscriptome Analysis
IMG Submission ID 113387
Completion Status Complete
IMG Completion Date 2017-01-30
PI Christopher S. Miller
PI Name
Analysis Project Description
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) megahit v. 1.0.6
Scaffold Count 571674
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 560655
Estimated Size 201557766
Sequencing Depth (MIGS-31.1)
Annotation Pipeline IMG Annotation Pipeline v.4.14.3
Added By JGI automated process on 2016-11-17
Last Modified By JGI automated process on 2019-10-06
ORF Comparison Tools
16S Recovered
16S Recovery Software
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 3300013080
IMG RNA-Seq ID
Genbank Accession
Assembly Accession
Genbank Release Date
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls
Number of Studies 1
Number of Biosamples 1
Number of Projects 1
Number of Related Analysis Projects 1
JGI INFORMATION
ITS Analysis Project ID 1120097 (Portal)
ITS Analysis Project Name Open water 3 Core 3 Depth 3 metatranscriptome Annotation
ITS Analysis Product Name Metagenome Metatranscriptome
ITS Version Number 1

 

 

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