ANALYSIS PROJECT INFORMATION | |
---|---|
GOLD Analysis Project ID
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Ga0131073 |
Analysis Project Name Prefix |
Nitrospinae bacterium SAG AG-538-I02 |
Analysis Project Name Suffix
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|
Analysis Project Type
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Single Cell Analysis (unscreened) |
IMG Submission ID
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89765 |
Completion Status |
Complete |
IMG Completion Date
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2016-06-30 |
PI | Ramunas Stepanauskas |
Description
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As described in Bigelow SCGC webpage |
Contamination Screening Method
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As described in Bigelow SCGC webpage |
Visibility | Public |
ANALYSIS PROJECT METADATA | |
Assembly Method
(MIGS-30)
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Spades 3.6 |
IMG Decontamination
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No |
IMG Decontamination Method
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|
GenePRIMP |
No |
Scaffold Count
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92 |
Contig Count
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|
Gene Calling Method
(MIGS-32)
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|
Gene Count |
983 |
Estimated Size |
944595 |
Sequencing Depth
(MIGS-31.1)
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|
Annotation Pipeline |
IMG Annotation Pipeline v.4.11.4 |
Added By |
Ramunas Stepanauskas
on 2016-06-17 |
Last Modified By |
JGI automated process
on 2018-02-14 |
Non-SP-Owner AP |
No |
PROJECT EXTERNAL REFERENCES | |
IMG Taxon ID
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2681812873 |
IMG RNA-Seq ID |
|
Genbank
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|
Assembly Accession |
|
Genbank Release Date |
|
SRA Runs |
|
ANALYSIS PROJECT COMPOSITION | |
Study |
Dark ocean microbial single cell genomics |
Number of Studies
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1 |
Number of Biosamples
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0 |
Number of Projects
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1 |
Number of Related Analysis Projects
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0 |
Derived Analysis Projects
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0 |
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