ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0129344
Analysis Project Name Prefix Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_RNA2
Analysis Project Name Suffix
Analysis Project Type Metatranscriptome Analysis
IMG Submission ID 105428
Completion Status Complete
IMG Completion Date 2016-12-08
PI Barbara Campbell
Description
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) megahit v. 1.0.6
IMG Decontamination
IMG Decontamination Method
GenePRIMP
Scaffold Count 437321
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 553506
Estimated Size 236450932
Sequencing Depth (MIGS-31.1)
Annotation Pipeline IMG Annotation Pipeline v.4.13.3
Added By JGI automated process on 2016-06-10
Last Modified By JGI automated process on 2019-10-07
Non-SP-Owner AP No
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 3300012520
IMG RNA-Seq ID
Genbank
Assembly Accession
Genbank Release Date
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series
Number of Studies 1
Number of Biosamples 1
Number of Projects 1
Number of Related Analysis Projects 2
Derived Analysis Projects 1
JGI INFORMATION
ITS Analysis Project ID 1110903 (Portal)
ITS Analysis Project Name CPBay_Sum_15_0.2_RNA2 Annotation
ITS Analysis Product Name Metagenome Metatranscriptome
ITS NCBI Taxon ID
ITS Version Number 1

 

 

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