ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0122472
Analysis Project Name Prefix Sphingopyxis sp. H053
Analysis Project Name Suffix
Analysis Project Type Genome Analysis
IMG Submission ID 95922
Completion Status Complete
Completion Date 2016-10-04
PI
Description Submitting a public genome from NCBI/GenBank to IMG for analysis.
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) SPAdes v. 3.5.0
IMG Decontamination Yes
IMG Decontamination Method PhiX decontamination
GenePRIMP No
Scaffold Count 26
Contig Count 26
Gene Calling Method (MIGS-32)
Gene Count 4882
Estimated Size 5130000
Sequencing Depth (MIGS-31.1) 89.0x
Annotation Pipeline IMG Annotation Pipeline v.4.12.0
Added By JGI automated process on 2016-05-10
Last Modified By
Non-SP-Owner AP No
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 2698536398
IMG RNA-Seq ID
Genbank
Genbank ID LNRU00000000 (GCA_001468225.1)
Release Date 2015-12-18
NCBI Genbank Version LNRU01
Assembly Accession GCA_001468225.1
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Genome sequencing of isolates from drinking water distribution system in Cincinnati, Ohio
Number of Studies 1
Number of Projects 1
Number of Related Analysis Projects 0
Derived Analysis Projects 0

 

 

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