ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0119040
Analysis Project Name Prefix Salmonella enterica enterica sv. Typhimurium DT104 613sV123
Analysis Project Name Suffix
Analysis Project Type Genome Analysis (Isolate)
IMG Submission ID 93242
Completion Status Complete
IMG Completion Date 2016-08-11
PI
Description Submitting a public genome from NCBI/GenBank to IMG for analysis.
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30)
IMG Decontamination Yes
IMG Decontamination Method PhiX decontamination
Scaffold Count 66
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 4904
Estimated Size 4949538
Sequencing Depth (MIGS-31.1)
Annotation Pipeline IMG Annotation Pipeline v.4.11.4
Added By JGI automated process on 2016-05-06
Last Modified By JGI automated process on 2017-11-21
Non-SP-Owner AP No
ORF Comparison Tools
16S Recovered
16S Recovery Software
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 2690315729
Genbank Accession
Genbank ID CTQM00000000 (GCA_001219185.1)
Release Date 2015-08-13
NCBI Genbank Version CTQM01
Assembly Accession GCA_001219185.1
Genbank Release Date 2015-08-13
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Genome sequencing to investigate the diversity of Salmonella and Vibrio cholerae isolates
Number of Studies 1
Number of Projects 1
Number of Related Analysis Projects 0

 

 

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