ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0112339
Analysis Project Name Prefix Vibrio parahaemolyticus sv. O3:K6 RIMD 2210633
Analysis Project Name Suffix
Analysis Project Type Genome Analysis
IMG Submission ID 86520
Completion Status Complete
IMG Completion Date 2016-05-07
PI
Description Submitting a public genome from NCBI/GenBank to IMG for analysis.
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) Celera Assembler v. 7.0
IMG Decontamination Yes
IMG Decontamination Method PhiX decontamination
GenePRIMP No
Scaffold Count 17
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 5034
Estimated Size 5149386
Sequencing Depth (MIGS-31.1) 42.0x
Annotation Pipeline IMG Annotation Pipeline v.4.10.5
Added By JGI automated process on 2016-02-19
Last Modified By JGI automated process on 2017-11-21
Non-SP-Owner AP No
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 2667527685
IMG RNA-Seq ID
Genbank
Genbank ID LFUR00000000 (GCA_001270945.1)
Release Date 2015-08-24
NCBI Genbank Version LFUR01
Assembly Accession GCA_001270945.1
Genbank Release Date 2015-08-24
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Genome sequencing of pandemic clones of Vibrio parahaemolyticus strains from Chile
Number of Studies 1
Number of Projects 1
Number of Related Analysis Projects 0
Derived Analysis Projects 0

 

 

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