Studies
|
47,490 |
|
Biosamples
|
121,670 |
|
Sequencing Projects
|
389,115 |
|
Analysis Projects
|
310,404 |
| Organisms | 403,380 |
| ANALYSIS PROJECT INFORMATION | |||||||
|---|---|---|---|---|---|---|---|
|
GOLD Analysis Project ID
|
Ga0111765 |
||||||
| Analysis Project Name Prefix |
Oblitimonas alkaliphila D3318 |
||||||
|
Analysis Project Name Suffix
|
|
||||||
|
Analysis Project Type
|
Genome Analysis (Isolate) |
||||||
|
IMG Submission ID
|
85345 | ||||||
| Completion Status |
Complete |
||||||
|
IMG Completion Date
|
2016-04-20 |
||||||
| PI | |||||||
| PI Name |
|
||||||
|
Analysis Project Description
|
Submitting a public genome from NCBI/GenBank to IMG for analysis. |
||||||
| Visibility | Public | ||||||
| ANALYSIS PROJECT METADATA | |||||||
|
Assembly Method
(MIGS-30)
|
CLC Genomics Workbench Assembler v. 7.5;Manual Curation v. 2015-04 |
||||||
|
IMG Decontamination
|
Yes |
||||||
|
IMG Decontamination Method
|
PhiX decontamination |
||||||
|
Scaffold Count
|
1 |
||||||
|
Contig Count
|
1 |
||||||
|
Gene Calling Method
(MIGS-32)
|
|
||||||
| Gene Count |
2208 |
||||||
| Estimated Size |
2294397 |
||||||
|
Sequencing Depth
(MIGS-31.1)
|
250.0x |
||||||
| Annotation Pipeline |
IMG Annotation Pipeline v.4.10.2 |
||||||
| Added By |
JGI automated process
on 2016-02-19 |
||||||
| Last Modified By |
JGI automated process
on 2018-07-02 |
||||||
|
ORF Comparison Tools
|
|
||||||
|
16S Recovered
|
|
||||||
|
16S Recovery Software
|
|
||||||
| PROJECT EXTERNAL REFERENCES | |||||||
|
IMG Taxon ID
|
2663763088 |
||||||
|
Genbank Accession
|
|
||||||
| Assembly Accession |
GCA_001267255.1 |
||||||
| Genbank Release Date |
2015-12-24 |
||||||
| ANALYSIS PROJECT COMPOSITION | |||||||
| Study |
Genome sequences of Oblitimonas alkaliphila, a novel bacterium of the pseudomonadaceae family |
||||||
|
Number of Studies
|
1 |
||||||
|
Number of Projects
|
1 |
||||||
|
Number of Related Analysis Projects
|
0 |
||||||
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