Studies
|
40,442 |
|
Biosamples
|
81,883 |
|
Sequencing Projects
|
315,421 |
|
Analysis Projects
|
247,741 |
| Organisms | 370,126 |
| ANALYSIS PROJECT INFORMATION | |||||||
|---|---|---|---|---|---|---|---|
|
GOLD Analysis Project ID
|
Ga0104357 |
||||||
| Analysis Project Name Prefix |
Methanobrevibacter gottschalkii DSM 11978 |
||||||
|
Analysis Project Name Suffix
|
|
||||||
|
Analysis Project Type
|
Genome Analysis |
||||||
|
IMG Submission ID
|
80514 | ||||||
| Completion Status |
Complete |
||||||
|
Completion Date
|
2016-03-14 |
||||||
| PI | William Kelly | ||||||
|
Description
|
|
||||||
| Visibility | Public | ||||||
| ANALYSIS PROJECT METADATA | |||||||
|
Assembly Method
(MIGS-30)
|
ALLPATHS v. r46652 |
||||||
|
IMG Decontamination
|
Yes |
||||||
|
IMG Decontamination Method
|
PhiX decontamination |
||||||
| GenePRIMP |
Yes |
||||||
|
Scaffold Count
|
20 |
||||||
|
Contig Count
|
|
||||||
|
Gene Calling Method
(MIGS-32)
|
|
||||||
| Gene Count |
1942 |
||||||
| Estimated Size |
1864477 |
||||||
|
Sequencing Depth
(MIGS-31.1)
|
675x |
||||||
| Annotation Pipeline |
|
||||||
| Added By |
JGI automated process
on 2016-01-08 |
||||||
| Last Modified By |
JGI automated process
on 2017-09-15 |
||||||
| Non-SP-Owner AP |
No |
||||||
| PROJECT EXTERNAL REFERENCES | |||||||
|
IMG Taxon ID
|
2654588138 |
||||||
| IMG RNA-Seq ID |
|
||||||
|
Genbank
|
|
||||||
| Assembly Accession |
GCA_900109595.1 |
||||||
| SRA Runs |
|
||||||
| ANALYSIS PROJECT COMPOSITION | |||||||
| Study |
The Hungate 1000. A catalogue of reference genomes from the rumen microbiome. |
||||||
|
Number of Studies
|
1 |
||||||
|
Number of Projects
|
1 |
||||||
|
Number of Related Analysis Projects
|
0 |
||||||
|
Derived Analysis Projects
|
0 |
||||||
| JGI INFORMATION | |||||||
|
ITS Analysis Project ID
|
1081953 (Portal) |
||||||
|
ITS Analysis Project Name
|
Methanobrevibacter gottschalkii DSM 11978 |
||||||
|
ITS Analysis Product Name
|
Microbial Minimal Draft Isolate Genome |
||||||
| ITS NCBI Taxon ID |
|
||||||
| ITS Version Number |
1 |
||||||
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