ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0074689
Analysis Project Name Prefix Pseudomonas vancouverensis LMG 20222
Analysis Project Name Suffix
Analysis Project Type Genome Analysis
IMG Submission ID 85952
Completion Status Complete
IMG Completion Date 2016-05-07
PI Joyce Loper
Description
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) HGAP v. 2.3.0_p5,protocol version=2.3.0 method=RS_HGAP_Assembly.3,smrtpipe.py v1.87.139483,
IMG Decontamination Yes
IMG Decontamination Method PhiX decontamination
GenePRIMP Yes
Scaffold Count 1
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 5987
Estimated Size 6424805
Sequencing Depth (MIGS-31.1) 88x
Annotation Pipeline IMG Annotation Pipeline v.4.10.2
Added By JGI automated process on 2015-06-24
Last Modified By JGI automated process on 2019-05-03
Non-SP-Owner AP No
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 2667527228
IMG RNA-Seq ID
Genbank
Genbank ID LT629803 (GCA_900105825.1)
Release Date 2016-10-21
NCBI Genbank Version LT629803.1
Assembly Accession GCA_900105825.1
Genbank Release Date 2016-10-21
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Genome sequencing of a diverse group of Pseudomonas species
Number of Studies 1
Number of Projects 1
Number of Related Analysis Projects 0
Derived Analysis Projects 0
JGI INFORMATION
ITS Analysis Project ID 1066910 (Portal)
ITS Analysis Project Name Pseudomonas vancouverensis LMG 20222
ITS Analysis Product Name Microbial Improved Draft Isolate Genome
ITS NCBI Taxon ID
ITS Version Number 1

 

 

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