Studies
|
56,334 |
|
Biosamples
|
196,988 |
|
Sequencing Projects
|
525,360 |
|
Analysis Projects
|
384,991 |
| Organisms | 484,221 |
| ANALYSIS PROJECT INFORMATION | |
|---|---|
|
GOLD Analysis Project ID
|
Ga0061013 |
| Analysis Project Name |
Coassembly of Cow X Switchgrass |
|
Analysis Project Name Suffix
|
|
|
Analysis Project Type
|
Combined Assembly |
|
IMG Submission ID
|
200622 |
| Completion Status |
Complete |
|
IMG Completion Date
|
2018-10-25 |
| PI | Matthias Hess |
|
Analysis Project Description
|
|
| Visibility | Public |
| ANALYSIS PROJECT METADATA | |
|
Assembly Method
(MIGS-30)
|
megahit v. 0.2.0 |
|
IMG Decontamination
|
|
|
IMG Decontamination Method
|
|
|
Scaffold Count
|
2686492 |
|
Contig Count
|
|
|
Gene Calling Method
(MIGS-32)
|
|
| Gene Count |
3011975 |
| Estimated Size |
1072925324 |
|
Sequencing Depth
(MIGS-31.1)
|
|
| Genbank Anomalous Assembly |
|
| Genbank Anomalous Reason |
|
| Annotation Pipeline |
IMG Annotation Pipeline v.4.16.5 |
| Added By | Matthias Hess on 2014-06-05 |
| Last Modified By | JGI automated process on 2023-05-12 |
|
ORF Comparison Tools
|
|
| PROJECT EXTERNAL REFERENCES | |
|
IMG Taxon ID
|
3300030772 |
|
Genbank Accession
|
|
| Genbank Release Date |
|
| SRA Runs |
|
| Genome Publication |
|
| ANALYSIS PROJECT COMPOSITION | |
| Study |
Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis |
|
Number of Studies
|
1 |
|
Number of Biosamples
|
3 |
|
Number of Projects
|
3 |
|
Number of Related Analysis Projects
|
19 |
|
Derived Analysis Projects (DAP)
|
6 |
| JGI INFORMATION | |
|
JGI Data Utilization Status
|
Restricted |
|
ITS Analysis Project ID
|
1053681 (Portal) |
|
ITS Analysis Project Name
|
Coassembly of Cow X Switchgrass |
|
ITS Analysis Product Name
|
Co-Assembly - Eukaryotic Community Metatranscriptome |
| ITS Version Number |
1 |
|
Library Names
|
UWZZ, WGNZ, WHHZ |
|
JGI Award DOI
|
10.46936/10.25585/60000804 |
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