Studies
|
56,015 |
|
Biosamples
|
183,991 |
|
Sequencing Projects
|
508,009 |
|
Analysis Projects
|
381,500 |
| Organisms | 480,469 |
| ANALYSIS PROJECT INFORMATION | |
|---|---|
|
GOLD Analysis Project ID
|
Ga0005057 |
| Analysis Project Name |
Soil microbial communities from Rifle, Colorado - Rifle CSP2_plank highO2_0.2 |
|
Analysis Project Name Suffix
|
|
|
Analysis Project Type
|
Metagenome Analysis |
|
IMG Submission ID
|
35504 |
| Completion Status |
Complete |
|
IMG Completion Date
|
2014-04-12 |
| PI | Jill Banfield |
|
Analysis Project Description
|
|
| Visibility | Public |
| ANALYSIS PROJECT METADATA | |
|
Assembly Method
(MIGS-30)
|
|
|
Scaffold Count
|
18396517 |
|
Contig Count
|
|
|
Gene Calling Method
(MIGS-32)
|
FragGeneScan version 1.16, prokaryotic GeneMark.hmm version 2.8, Metagene Annotator version 1.0, Prodigal V2.50: November, 2010 |
| Gene Count |
18458246 |
| Estimated Size |
4540697917 |
|
Sequencing Depth
(MIGS-31.1)
|
|
| Genbank Anomalous Assembly |
|
| Genbank Anomalous Reason |
|
| Annotation Pipeline |
|
| Added By | Jill Banfield on 2013-09-09 |
| Last Modified By | JGI automated process on 2023-02-03 |
|
ORF Comparison Tools
|
|
| PROJECT EXTERNAL REFERENCES | |
|
IMG Taxon ID
|
3300002529 |
| IMG Metagenome bin count |
21 |
| IMG Predicted viruses |
11 |
|
Genbank Accession
|
|
| Genbank Release Date |
|
| SRA Runs |
|
| ANALYSIS PROJECT COMPOSITION | |
| Study |
Soil microbial communities from Rifle, Colorado, USA |
|
Number of Studies
|
1 |
|
Number of Biosamples
|
1 |
|
Number of Projects
|
1 |
|
Number of Related Analysis Projects
|
0 |
|
Derived Analysis Projects (DAP)
|
273 |
| JGI INFORMATION | |
|
JGI Data Utilization Status
|
Unrestricted |
|
ITS Analysis Project ID
|
1023874 (Portal) |
|
ITS Analysis Project Name
|
Rifle CSP2_plank highO2_0.2 |
|
ITS Analysis Product Name
|
Metagenome Standard Draft |
| ITS Version Number |
1 |
|
JGI Award DOI
|
10.46936/10.25585/60000542 |
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