Studies
|
56,011 |
|
Biosamples
|
183,990 |
|
Sequencing Projects
|
508,073 |
|
Analysis Projects
|
381,503 |
| Organisms | 480,513 |
| ANALYSIS PROJECT INFORMATION | |
|---|---|
|
GOLD Analysis Project ID
|
Ga0005048 |
| Analysis Project Name |
Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_2 |
|
Analysis Project Name Suffix
|
|
|
Analysis Project Type
|
Metagenome Analysis |
|
IMG Submission ID
|
29039 |
| Completion Status |
Complete |
|
IMG Completion Date
|
2014-01-31 |
| PI | Jill Banfield |
|
Analysis Project Description
|
|
| Visibility | Public |
| ANALYSIS PROJECT METADATA | |
|
Assembly Method
(MIGS-30)
|
SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 |
|
Scaffold Count
|
15771940 |
|
Contig Count
|
|
|
Gene Calling Method
(MIGS-32)
|
FragGeneScan version 1.16, prokaryotic GeneMark.hmm version 2.8, Metagene Annotator version 1.0, Prodigal V2.50: November, 2010 |
| Gene Count |
16528230 |
| Estimated Size |
3668901357 |
|
Sequencing Depth
(MIGS-31.1)
|
|
| Genbank Anomalous Assembly |
|
| Genbank Anomalous Reason |
|
| Annotation Pipeline |
|
| Added By | Jill Banfield on 2013-09-09 |
| Last Modified By | JGI automated process on 2023-01-13 |
|
ORF Comparison Tools
|
|
| PROJECT EXTERNAL REFERENCES | |
|
IMG Taxon ID
|
3300002243 |
| IMG Metagenome bin count |
5 |
| IMG Predicted viruses |
98 |
|
Genbank Accession
|
|
| Genbank Release Date |
|
| SRA Runs |
|
| ANALYSIS PROJECT COMPOSITION | |
| Study |
Soil microbial communities from Rifle, Colorado, USA |
|
Number of Studies
|
1 |
|
Number of Biosamples
|
1 |
|
Number of Projects
|
1 |
|
Number of Related Analysis Projects
|
5 |
|
Derived Analysis Projects (DAP)
|
0 |
| JGI INFORMATION | |
|
JGI Data Utilization Status
|
Unrestricted |
|
ITS Analysis Project ID
|
1023847 (Portal) |
|
ITS Analysis Project Name
|
Rifle CSP2_sed 16_2 |
|
ITS Analysis Product Name
|
Metagenome Standard Draft |
| ITS Version Number |
1 |
|
JGI Award DOI
|
10.46936/10.25585/60000542 |
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