Studies
|
56,336 |
|
Biosamples
|
196,971 |
|
Sequencing Projects
|
525,344 |
|
Analysis Projects
|
385,119 |
| Organisms | 484,224 |
| ANALYSIS PROJECT INFORMATION | |
|---|---|
|
GOLD Analysis Project ID
|
Ga0591335 |
| Analysis Project Name |
Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.753 (v5.1 annotation) |
| Analysis Project Name Stem |
Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.753 |
|
Analysis Project Name Suffix
|
(v5.1 annotation) |
|
Analysis Project Type
|
Metagenome Analysis |
|
IMG Submission ID
|
291483 |
| Completion Status |
Complete |
|
IMG Completion Date
|
2022-12-24 |
| PI | Holly Simon |
|
Analysis Project Description
|
|
| Visibility | Public |
| ANALYSIS PROJECT METADATA | |
|
Assembly Method
(MIGS-30)
|
spades v. 3.11.1 |
|
Scaffold Count
|
289348 |
|
Contig Count
|
|
|
Gene Calling Method
(MIGS-32)
|
|
| Gene Count |
399895 |
| Estimated Size |
170127123 |
|
Sequencing Depth
(MIGS-31.1)
|
|
| Genbank Anomalous Assembly |
|
| Genbank Anomalous Reason |
|
| Annotation Pipeline |
IMG Annotation Pipeline v.5.1.13 |
| Added By | JGI automated process on 2022-12-22 |
| Last Modified By | JGI automated process on 2023-02-23 |
|
ORF Comparison Tools
|
|
| PROJECT EXTERNAL REFERENCES | |
|
IMG Taxon ID
|
3300059702 |
| IMG Metagenome bin count | 0 |
| IMG Predicted viruses |
|
|
Genbank Accession
|
|
| Genbank Release Date |
|
| SRA Runs |
|
| ANALYSIS PROJECT COMPOSITION | |
| Study |
Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series |
|
Number of Studies
|
1 |
|
Number of Biosamples
|
1 |
|
Number of Projects
|
1 |
|
Number of Related Analysis Projects
|
2 |
|
Derived Analysis Projects (DAP)
|
0 |
| JGI INFORMATION | |
|
JGI Data Utilization Status
|
Unrestricted |
|
ITS Analysis Project ID
|
1421837 (Portal) |
|
ITS Analysis Project Name
|
Columbia river estuary metaG S.753 (v5.1 annotation) |
|
ITS Analysis Product Name
|
Metagenome Minimal Draft |
| ITS Version Number |
4 |
|
Library Names
|
AUSNT |
|
JGI Award DOI
|
10.46936/10.25585/60000867 |
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