ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0591199
Analysis Project Name Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_25 (Metagenome Metatranscriptome)
Analysis Project Name Stem Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_25
Analysis Project Name Suffix
Analysis Project Type Metatranscriptome Analysis
IMG Submission ID 290327
Completion Status Complete
IMG Completion Date 2022-12-21
PI Mary Ann Moran
Analysis Project Description
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) MEGAHIT v. 1.2.9
Scaffold Count 592708
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 755419
Estimated Size 327130889
Sequencing Depth (MIGS-31.1)
Genbank Anomalous Assembly
Genbank Anomalous Reason
Annotation Pipeline IMG Annotation Pipeline v.5.1.12
Added By JGI automated process on 2022-12-16
Last Modified By JGI automated process on 2022-12-22
ORF Comparison Tools
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 3300059632
IMG RNA-Seq ID
Genbank Accession
Genbank Release Date
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA
Number of Studies 1
Number of Biosamples 1
Number of Projects 1
Number of Related Analysis Projects 3
JGI INFORMATION
JGI Data Utilization Status Unrestricted
ITS Analysis Project ID 1419330 (Portal)
ITS Analysis Project Name T. pseudonana natural community EXP01_RNA25Annotation (v5.1 annotation)
ITS Analysis Product Name Metagenome Metatranscriptome
ITS Version Number 2
Library Names NBYTC
JGI Award DOI 10.46936/10.25585/60001361

 

 

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