ANALYSIS PROJECT INFORMATION
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GOLD Analysis Project ID
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Ga0591189
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Analysis Project Name
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Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_15 (Metagenome Metatranscriptome)
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Analysis Project Name Stem
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Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_15
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Analysis Project Name Suffix
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(v5.1 annotation)
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Analysis Project Type
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Metatranscriptome Analysis
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IMG Submission ID
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290382
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Completion Status
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Complete
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IMG Completion Date
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2022-12-23
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PI
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Mary Ann Moran
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Analysis Project Description
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Visibility
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Public
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ANALYSIS PROJECT METADATA
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Assembly Method
(MIGS-30)
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megahit v. 2021-11-19 00:35:18 - MEGAHIT v1.2.9
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Scaffold Count
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959427
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Contig Count
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Gene Calling Method
(MIGS-32)
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Gene Count
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1209627
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Estimated Size
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536448267
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Sequencing Depth
(MIGS-31.1)
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Genbank Anomalous Assembly
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Genbank Anomalous Reason
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Annotation Pipeline
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IMG Annotation Pipeline v.5.1.13
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Added By
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JGI automated process on 2022-12-16
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Last Modified By
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Supratim Mukherjee on 2023-02-11
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ORF Comparison Tools
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PROJECT EXTERNAL REFERENCES
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IMG Taxon ID
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3300059675
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IMG RNA-Seq ID
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Genbank Accession
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Genbank Release Date
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SRA Runs
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ANALYSIS PROJECT COMPOSITION
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Study
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Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA
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Number of Studies
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1
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Number of Biosamples
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1
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Number of Projects
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1
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Number of Related Analysis Projects
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3
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JGI INFORMATION
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JGI Data Utilization Status
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Unrestricted
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ITS Analysis Project ID
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1419320 (Portal)
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ITS Analysis Project Name
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T. pseudonana natural community EXP01_RNA15Annotation (v5.1 annotation)
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ITS Analysis Product Name
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Metagenome Metatranscriptome
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ITS Version Number
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2
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Library Names
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HTPSO
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JGI Award DOI
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