ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0552813
Analysis Project Name Metatranscriptome of cotton plant rhizosphere microbial communities from Jinghe, China - JLBT
Analysis Project Name Suffix
Analysis Project Type Metatranscriptome Analysis
IMG Submission ID
Completion Status Incomplete
IMG Completion Date
PI Unknown
Analysis Project Description Assembly and annotation of public SRA data set.
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) Custom JGI assembly.
Scaffold Count
Contig Count
Gene Calling Method (MIGS-32)
Gene Count
Estimated Size
Sequencing Depth (MIGS-31.1)
Genbank Anomalous Assembly
Genbank Anomalous Reason
Annotation Pipeline
Added By JGI automated process on 2022-05-11
Last Modified By
ORF Comparison Tools
PROJECT EXTERNAL REFERENCES
IMG Taxon ID
IMG RNA-Seq ID
Genbank Accession
Genbank Release Date
SRA Runs
 
SRA Run Id SRR15858987  (Link to NCBI )
 
SRA Run Id SRR15859085  (Link to NCBI )
ANALYSIS PROJECT COMPOSITION
Study Cotton plant rhizosphere microbial communities from various locations in China
Number of Studies 1
Number of Biosamples 1
Number of Projects 1
Number of Related Analysis Projects 0

 

 

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