ANALYSIS PROJECT INFORMATION | |
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GOLD Analysis Project ID
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Ga0504724 |
Analysis Project Name |
Metatranscriptome of seawater microbial communities from Mount Hope Bay, Rhode Island, USA - RI_1B2_100118_1351 (Metagenome Metatranscriptome) |
Analysis Project Name Stem |
Metatranscriptome of seawater microbial communities from Mount Hope Bay, Rhode Island, USA - RI_1B2_100118_1351 |
Analysis Project Name Suffix
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Analysis Project Type
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Metatranscriptome Analysis |
IMG Submission ID
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268684 |
Completion Status |
Complete |
IMG Completion Date
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2022-05-10 |
PI | Eric Wommack |
Analysis Project Description
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Visibility | Public |
ANALYSIS PROJECT METADATA | |
Assembly Method
(MIGS-30)
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megahit v. 2022-04-29 04:50:00 - MEGAHIT v1.2.9 |
Scaffold Count
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205044 |
Contig Count
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Gene Calling Method
(MIGS-32)
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Gene Count |
256104 |
Estimated Size |
105335072 |
Sequencing Depth
(MIGS-31.1)
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Genbank Anomalous Assembly |
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Genbank Anomalous Reason |
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Annotation Pipeline |
IMG Annotation Pipeline v.5.1.5 |
Added By | JGI automated process on 2021-10-16 |
Last Modified By | JGI automated process on 2022-08-04 |
ORF Comparison Tools
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PROJECT EXTERNAL REFERENCES | |
IMG Taxon ID
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3300052328 |
IMG RNA-Seq ID |
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Genbank Accession
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Genbank Release Date |
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SRA Runs |
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ANALYSIS PROJECT COMPOSITION | |
Study |
Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean |
Number of Studies
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1 |
Number of Biosamples
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1 |
Number of Projects
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1 |
Number of Related Analysis Projects
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1 |
JGI INFORMATION | |
JGI Data Utilization Status
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Unrestricted |
ITS Analysis Project ID
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1335756 (Portal) |
ITS Analysis Project Name
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RI_1B2_MT_100118_1351 Annotation |
ITS Analysis Product Name
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Metagenome Metatranscriptome |
ITS Version Number |
1 |
Library Names
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NAAHP |
JGI Award DOI
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10.46936/10.25585/60000489 |
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