ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0502120
Analysis Project Name Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_18 (Metagenome Metatranscriptome)
Analysis Project Name Stem Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_18
Analysis Project Name Suffix (v5.0 annotation)
Analysis Project Type Metatranscriptome Analysis
IMG Submission ID 258745
Completion Status Complete
IMG Completion Date 2021-12-02
PI Mary Ann Moran
Analysis Project Description
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) megahit v. 2021-11-19 00:47:40 - MEGAHIT v1.2.9
Scaffold Count 712735
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 875504
Estimated Size 394216742
Sequencing Depth (MIGS-31.1)
Genbank Anomalous Assembly
Genbank Anomalous Reason
Annotation Pipeline IMG Annotation Pipeline v.5.0.25
Added By JGI automated process on 2021-09-11
Last Modified By Supratim Mukherjee on 2023-02-11
ORF Comparison Tools
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 3300049469
IMG RNA-Seq ID
Genbank Accession
Genbank Release Date
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA
Number of Studies 1
Number of Biosamples 1
Number of Projects 1
Number of Related Analysis Projects 3
JGI INFORMATION
JGI Data Utilization Status Unrestricted
ITS Analysis Project ID 1335297 (Portal)
ITS Analysis Project Name T. pseudonana natural community EXP01_RNA18 Annotation (v5.0 annotation)
ITS Analysis Product Name Metagenome Metatranscriptome
ITS Version Number 1
Library Names HTPST
JGI Award DOI