ANALYSIS PROJECT INFORMATION | |
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GOLD Analysis Project ID
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Ga0500780 |
Analysis Project Name |
Marivita sp. SBSPR1 |
Analysis Project Name Suffix
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Analysis Project Type
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Metagenome-Assembled Genome |
IMG Submission ID
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255472 |
NCBI BioProject Accession
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NCBI BioSample Accession
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Completion Status |
Complete |
IMG Completion Date
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2021-09-13 |
PI | Clifton B de Mesquita |
Analysis Project Description
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Improved Marivita MAG from R1_B_D2 |
Visibility | Public |
ANALYSIS PROJECT METADATA | |
GOLD Organism Name |
Marivita sp. SBSPR1 |
NCBI Taxonomy ID
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659428 |
Phylum | PROTEOBACTERIA-ALPHA |
Phylogeny Suggestion |
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Genus
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Marivita |
Species |
Marivita sp. SBSPR1 |
Strain |
SBSPR1 |
Domain |
BACTERIAL |
NCBI Superkingdom |
Bacteria |
NCBI Kingdom |
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Number of tRNAs
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tRNA Software
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Completeness Strategy
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Scaffold Count
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82 |
Contig Count
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Binning Method
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MetaBAT, manually extended and reassembled with Geneious |
Binning Parameters
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Reassembly Attempted
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MAG Coverage Software
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Gene Calling Method
(MIGS-32)
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Gene Count |
3629 |
Estimated Size |
3604362 |
Sequencing Depth
(MIGS-31.1)
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Contamination Percentage |
0.74 |
Completeness Percentage |
99.1 |
Genbank Anomalous Assembly |
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Genbank Anomalous Reason |
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Annotation Pipeline |
IMG Annotation Pipeline v.5.0.24 |
Added By | Galina Ovchinnikova on 2021-08-25 |
Last Modified By | JGI automated process on 2021-09-24 |
ORF Comparison Tools
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16S Recovered
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16S Recovery Software
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PROJECT EXTERNAL REFERENCES | |
IMG Taxon ID
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2930928012 |
Genbank Accession
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Genbank Release Date |
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Genome Publication |
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ANALYSIS PROJECT COMPOSITION | |
Study |
Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. |
Source Analysis Project |
Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_B_D2_MG (SPAdes) |
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