ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0500637
Analysis Project Name Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere
Analysis Project Name Suffix
Analysis Project Type Metagenome Analysis
IMG Submission ID 271686
Completion Status Complete
IMG Completion Date 2022-06-16
PI Mitchel Doktycz
Analysis Project Description
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) metaspades v. 3.15.2
Scaffold Count 1458565
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 1836119
Estimated Size 1050453078
Sequencing Depth (MIGS-31.1)
Genbank Anomalous Assembly
Genbank Anomalous Reason
Annotation Pipeline IMG Annotation Pipeline v.v5.0.25.aws
Added By JGI automated process on 2021-08-21
Last Modified By JGI automated process on 2022-08-16
ORF Comparison Tools
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 3300053178
IMG Metagenome bin count 0
IMG Predicted viruses
Genbank Accession
Genbank Release Date
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA
Number of Studies 1
Number of Biosamples 1
Number of Projects 1
Number of Related Analysis Projects 0
Derived Analysis Projects (DAP) 0
JGI INFORMATION
JGI Data Utilization Status Unrestricted
ITS Analysis Project ID 1336057 (Portal)
ITS Analysis Project Name GW-11047-CL2_41_30 endosphere metagenome
ITS Analysis Product Name Metagenome Minimal Draft
ITS Version Number 1
Library Names HSZYA
JGI Award DOI