ANALYSIS PROJECT INFORMATION | |
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GOLD Analysis Project ID
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Ga0499909 |
Analysis Project Name |
Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TR20 (Metagenome Metatranscriptome) |
Analysis Project Name Stem |
Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TR20 |
Analysis Project Name Suffix
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Analysis Project Type
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Metatranscriptome Analysis |
IMG Submission ID
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257821 |
Completion Status |
Complete |
IMG Completion Date
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2021-11-07 |
PI | Vanessa Bailey |
Analysis Project Description
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|
Visibility | Public |
ANALYSIS PROJECT METADATA | |
Assembly Method
(MIGS-30)
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megahit v. 2021-10-13 10:53:15 - MEGAHIT v1.2.9 |
Scaffold Count
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35847 |
Contig Count
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Gene Calling Method
(MIGS-32)
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|
Gene Count |
52720 |
Estimated Size |
32600124 |
Sequencing Depth
(MIGS-31.1)
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|
Genbank Anomalous Assembly |
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Genbank Anomalous Reason |
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Annotation Pipeline |
IMG Annotation Pipeline v.5.0.25 |
Added By | JGI automated process on 2021-08-17 |
Last Modified By | JGI automated process on 2021-11-08 |
ORF Comparison Tools
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PROJECT EXTERNAL REFERENCES | |
IMG Taxon ID
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3300048843 |
IMG RNA-Seq ID |
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Genbank Accession
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Genbank Release Date |
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SRA Runs |
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ANALYSIS PROJECT COMPOSITION | |
Study |
Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA |
Number of Studies
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1 |
Number of Biosamples
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1 |
Number of Projects
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1 |
Number of Related Analysis Projects
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1 |
JGI INFORMATION | |
JGI Data Utilization Status
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Unrestricted |
ITS Analysis Project ID
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1311064 (Portal) |
ITS Analysis Project Name
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TR20 metaT Annotation |
ITS Analysis Product Name
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Metagenome Metatranscriptome |
ITS Version Number |
1 |
JGI Award DOI
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10.46936/fics.proj.2020.51537/60000209 |
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