Studies
|
56,035 |
|
Biosamples
|
191,586 |
|
Sequencing Projects
|
515,842 |
|
Analysis Projects
|
381,622 |
| Organisms | 480,341 |
| ANALYSIS PROJECT INFORMATION | |
|---|---|
|
GOLD Analysis Project ID
|
Ga0497503 |
| Analysis Project Name |
Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ohio, USA - LE WWC BNZ 80a (Eukaryote Community Metatranscriptome) |
| Analysis Project Name Stem |
Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ohio, USA - LE WWC BNZ 80a |
|
Analysis Project Name Suffix
|
|
|
Analysis Project Type
|
Metatranscriptome Analysis |
|
IMG Submission ID
|
257968 |
| Completion Status |
Complete |
|
IMG Completion Date
|
2021-11-10 |
| PI | Steven Wilhelm |
|
Analysis Project Description
|
|
| Visibility | Public |
| ANALYSIS PROJECT METADATA | |
|
Assembly Method
(MIGS-30)
|
megahit v. 2021-10-08 19:20:37 - MEGAHIT v1.2.9 |
|
Scaffold Count
|
3215 |
|
Contig Count
|
|
|
Gene Calling Method
(MIGS-32)
|
|
| Gene Count |
3183 |
| Estimated Size |
1473366 |
|
Sequencing Depth
(MIGS-31.1)
|
|
| Genbank Anomalous Assembly |
|
| Genbank Anomalous Reason |
|
| Annotation Pipeline |
IMG Annotation Pipeline v.5.0.25 |
| Added By | JGI automated process on 2021-07-17 |
| Last Modified By | JGI automated process on 2022-05-25 |
|
ORF Comparison Tools
|
|
| PROJECT EXTERNAL REFERENCES | |
|
IMG Taxon ID
|
3300048983 |
| IMG RNA-Seq ID |
|
|
Genbank Accession
|
|
| Genbank Release Date |
|
| SRA Runs |
|
| ANALYSIS PROJECT COMPOSITION | |
| Study |
Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA |
|
Number of Studies
|
1 |
|
Number of Biosamples
|
1 |
|
Number of Projects
|
1 |
|
Number of Related Analysis Projects
|
0 |
| JGI INFORMATION | |
|
JGI Data Utilization Status
|
Restricted |
|
ITS Analysis Project ID
|
1318909 (Portal) |
|
ITS Analysis Project Name
|
LE WWC BNZ 80a metatranscriptome |
|
ITS Analysis Product Name
|
Eukaryote Community Metatranscriptome |
| ITS Version Number |
1 |
|
Library Names
|
HSCXX |
|
JGI Award DOI
|
10.46936/10.25585/60001173 |
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