ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0496081
Analysis Project Name Metatranscriptome of soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TR1 (Metagenome Metatranscriptome)
Analysis Project Name Stem Metatranscriptome of soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TR1
Analysis Project Name Suffix
Analysis Project Type Metatranscriptome Analysis
IMG Submission ID 254698
Completion Status Complete
IMG Completion Date 2021-08-15
PI Vanessa Bailey
Analysis Project Description
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) megahit v. 2021-08-01 09:02:10 - MEGAHIT v1.2.9
Scaffold Count 133881
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 164524
Estimated Size 102073033
Sequencing Depth (MIGS-31.1)
Genbank Anomalous Assembly
Genbank Anomalous Reason
Annotation Pipeline IMG Annotation Pipeline v.5.0.23
Added By JGI automated process on 2021-05-29
Last Modified By JGI automated process on 2021-11-07
ORF Comparison Tools
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 3300046800
IMG RNA-Seq ID
Genbank Accession
Genbank Release Date
SRA Runs
ANALYSIS PROJECT COMPOSITION
Study Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA
Number of Studies 1
Number of Biosamples 1
Number of Projects 1
Number of Related Analysis Projects 1
JGI INFORMATION
JGI Data Utilization Status Unrestricted
ITS Analysis Project ID 1311007 (Portal)
ITS Analysis Project Name TR1 metaT Annotation
ITS Analysis Product Name Metagenome Metatranscriptome
ITS Version Number 1
JGI Award DOI 10.46936/fics.proj.2020.51537/60000209

 

 

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