ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0495776
Analysis Project Name Prefix Combined Assembly of
Analysis Project Name Suffix pooled viral contigs from multiple samples
Analysis Project Type Combined Assembly
IMG Submission ID 253539
Completion Status Complete
IMG Completion Date 2021-06-30
PI Nikos Kyrpides
Analysis Project Description Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Assembled human gut metagenomes were obtained from MGnify and previously published studies. Assemblies were performed by original studies using a combination of MEGAHIT and MetaSPAdes. Viral contigs were identified using a custom pipeline we developed featuring the Earth's Virome VPFs, Pfams, VirFinder, and gene strand switch rate. After applying CheckV, 189,680 viral genomes with >50% completeness were identified and form the Metagenomic Gut Virus (MGV) catalogue. This combined assembly was generated from 11810 metagenome sequencing projects. Due to limitation on displaying a large number of projects here, only 50 projects/Biosamples are listed now on this analysis project. A link to the complete list will be available soon.
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) MEGAHIT&MetaSPAdes v. N/A1
IMG Decontamination
IMG Decontamination Method
Scaffold Count 189680
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 12482514
Estimated Size 8803222510
Sequencing Depth (MIGS-31.1)
Annotation Pipeline IMG Annotation Pipeline v.5.0.23
Added By Supratim Mukherjee on 2021-05-11
Last Modified By Tatiparthi Reddy on 2021-07-10
ORF Comparison Tools
16S Recovered
16S Recovery Software
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 3300045988
Genbank Accession
Genbank Release Date
ANALYSIS PROJECT COMPOSITION
Study Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome
Number of Studies 1
Number of Biosamples 50
Number of Projects 50
Number of Related Analysis Projects 0
Derived Analysis Projects (DAP) 0

 

 

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