Studies
|
56,329 |
|
Biosamples
|
196,776 |
|
Sequencing Projects
|
525,145 |
|
Analysis Projects
|
385,404 |
| Organisms | 484,214 |
| ANALYSIS PROJECT INFORMATION | |
|---|---|
|
GOLD Analysis Project ID
|
Ga0495776 |
| Analysis Project Name |
Combined Assembly of pooled viral contigs from multiple samples |
| Analysis Project Name Stem |
Combined Assembly of |
|
Analysis Project Name Suffix
|
pooled viral contigs from multiple samples |
|
Analysis Project Type
|
Combined Assembly |
|
IMG Submission ID
|
253539 |
| Completion Status |
Complete |
|
IMG Completion Date
|
2021-06-30 |
| PI | Nikos Kyrpides |
|
Analysis Project Description
|
Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Assembled human gut metagenomes were obtained from MGnify and previously published studies. Assemblies were performed by original studies using a combination of MEGAHIT and MetaSPAdes. Viral contigs were identified using a custom pipeline we developed featuring the Earth's Virome VPFs, Pfams, VirFinder, and gene strand switch rate. After applying CheckV, 189,680 viral genomes with >50% completeness were identified and form the Metagenomic Gut Virus (MGV) catalogue. This combined assembly was generated from 11810 metagenome sequencing projects. Due to limitation on displaying a large number of projects here, only 50 projects/Biosamples are listed now on this analysis project. A link to the complete list will be available soon. |
| Visibility | Public |
| ANALYSIS PROJECT METADATA | |
|
Assembly Method
(MIGS-30)
|
MEGAHIT&MetaSPAdes v. N/A1 |
|
IMG Decontamination
|
|
|
IMG Decontamination Method
|
|
|
Scaffold Count
|
189680 |
|
Contig Count
|
|
|
Gene Calling Method
(MIGS-32)
|
|
| Gene Count |
12458808 |
| Estimated Size |
8803222510 |
|
Sequencing Depth
(MIGS-31.1)
|
|
| Genbank Anomalous Assembly |
|
| Genbank Anomalous Reason |
|
| Annotation Pipeline |
IMG Annotation Pipeline v.5.0.23 |
| Added By | Supratim Mukherjee on 2021-05-11 |
| Last Modified By | JGI automated process on 2021-09-25 |
|
ORF Comparison Tools
|
|
| PROJECT EXTERNAL REFERENCES | |
|
IMG Taxon ID
|
3300045988 |
|
Genbank Accession
|
|
| Genbank Release Date |
|
| SRA Runs |
|
| Genome Publication |
|
| ANALYSIS PROJECT COMPOSITION | |
| Study |
Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome |
|
Number of Studies
|
1 |
|
Number of Biosamples
|
50 |
|
Number of Projects
|
50 |
|
Number of Related Analysis Projects
|
0 |
|
Derived Analysis Projects (DAP)
|
0 |
You are going to add the following user to your analysis project, project, biosample and study.
Contact Name/Email: Do you want to continue?
You are going to remove permissions for the following user to your analysis project, project, biosample and study.
Contact Name/Email: Do you want to continue?
Changing the AP visibility will also change visibility on the following items:
Do you want to continue with this visibility change?
Changing the AP visibility will also change downgrade visibility on the following items:
Do you want to continue with this visibility change?
