ANALYSIS PROJECT INFORMATION | |
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GOLD Analysis Project ID
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Ga0494581 |
Analysis Project Name |
Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_200715.NP1 |
Analysis Project Name Suffix
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Analysis Project Type
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Metagenome Analysis |
IMG Submission ID
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282886 |
Completion Status |
Complete |
IMG Completion Date
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2022-08-28 |
PI | Alyse Larkin-Swartout |
Analysis Project Description
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|
Visibility | Public |
ANALYSIS PROJECT METADATA | |
Assembly Method
(MIGS-30)
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metaspades v. 3.15.2 |
Scaffold Count
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1430685 |
Contig Count
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|
Gene Calling Method
(MIGS-32)
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|
Gene Count |
1979338 |
Estimated Size |
962762894 |
Sequencing Depth
(MIGS-31.1)
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|
Genbank Anomalous Assembly |
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Genbank Anomalous Reason |
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Annotation Pipeline |
IMG Annotation Pipeline v.v5.0.25.aws |
Added By | JGI automated process on 2021-04-09 |
Last Modified By | JGI automated process on 2022-08-29 |
ORF Comparison Tools
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PROJECT EXTERNAL REFERENCES | |
IMG Taxon ID
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3300056307 |
IMG Metagenome bin count | 0 |
IMG Predicted viruses |
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Genbank Accession
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Genbank Release Date |
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SRA Runs |
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ANALYSIS PROJECT COMPOSITION | |
Study |
Sorted cell/s from seawater in Southern California Bight, CA, United States |
Number of Studies
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1 |
Number of Biosamples
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1 |
Number of Projects
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1 |
Number of Related Analysis Projects
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0 |
Derived Analysis Projects (DAP)
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0 |
JGI INFORMATION | |
JGI Data Utilization Status
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Restricted |
ITS Analysis Project ID
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1309033 (Portal) |
ITS Analysis Project Name
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Newport_SRmetag_200715.NP1 |
ITS Analysis Product Name
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Metagenome Minimal Draft |
ITS Version Number |
1 |
Library Names
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HPBZZ |
JGI Award DOI
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10.46936/10.25585/60001365 |
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