Studies
|
56,035 |
|
Biosamples
|
191,586 |
|
Sequencing Projects
|
515,842 |
|
Analysis Projects
|
381,622 |
| Organisms | 480,341 |
| ANALYSIS PROJECT INFORMATION | |
|---|---|
|
GOLD Analysis Project ID
|
Ga0494569 |
| Analysis Project Name |
Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_190625.NP1 |
|
Analysis Project Name Suffix
|
|
|
Analysis Project Type
|
Metagenome Analysis |
|
IMG Submission ID
|
255815 |
| Completion Status |
Complete |
|
IMG Completion Date
|
2021-09-07 |
| PI | Alyse Larkin-Swartout |
|
Analysis Project Description
|
|
| Visibility | Public |
| ANALYSIS PROJECT METADATA | |
|
Assembly Method
(MIGS-30)
|
metaspades v. 3.15.2 |
|
Scaffold Count
|
416664 |
|
Contig Count
|
|
|
Gene Calling Method
(MIGS-32)
|
|
| Gene Count |
538431 |
| Estimated Size |
254069394 |
|
Sequencing Depth
(MIGS-31.1)
|
|
| Genbank Anomalous Assembly |
|
| Genbank Anomalous Reason |
|
| Annotation Pipeline |
IMG Annotation Pipeline v.5.0.24 |
| Added By | JGI automated process on 2021-04-09 |
| Last Modified By | JGI automated process on 2022-05-25 |
|
ORF Comparison Tools
|
|
| PROJECT EXTERNAL REFERENCES | |
|
IMG Taxon ID
|
3300047452 |
| IMG Metagenome bin count |
6 |
| IMG Predicted viruses |
|
|
Genbank Accession
|
|
| Genbank Release Date |
|
| SRA Runs |
|
| ANALYSIS PROJECT COMPOSITION | |
| Study |
Sorted cell/s from seawater in Southern California Bight, CA, United States |
|
Number of Studies
|
1 |
|
Number of Biosamples
|
1 |
|
Number of Projects
|
1 |
|
Number of Related Analysis Projects
|
0 |
|
Derived Analysis Projects (DAP)
|
0 |
| JGI INFORMATION | |
|
JGI Data Utilization Status
|
Restricted |
|
ITS Analysis Project ID
|
1309009 (Portal) |
|
ITS Analysis Project Name
|
Newport_SRmetag_190625.NP1 |
|
ITS Analysis Product Name
|
Metagenome Minimal Draft |
| ITS Version Number |
1 |
|
Library Names
|
HOWXX |
|
JGI Award DOI
|
10.46936/10.25585/60001365 |
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