ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0487904
Analysis Project Name Phytophthora rubi SCRP324
Analysis Project Name Suffix
Analysis Project Type Genome Analysis (Isolate)
IMG Submission ID 261481
Completion Status Complete
IMG Completion Date 2022-02-15
PI
Analysis Project Description GOLD analysis project created from public NCBI/GenBank data.
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) SPAdes v. 3.6.2
IMG Decontamination
IMG Decontamination Method
Scaffold Count 13946
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 33732
Estimated Size 77910222
Sequencing Depth (MIGS-31.1) 50.36x
Genbank Anomalous Assembly No
Genbank Anomalous Reason
Annotation Pipeline IMG Annotation Pipeline v.5.1.1
Added By JGI automated process on 2021-03-15
Last Modified By JGI automated process on 2022-02-23
ORF Comparison Tools
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 2943719931
Genbank Accession
Genbank ID QXFU00000000 (GCA_009732945.1)
Release Date 2020-08-05
NCBI Genbank Version QXFU01
Genbank Release Date 2020-08-05
ANALYSIS PROJECT COMPOSITION
Study Isolates of two closely related phytophthora species causing either red core disease on Strawberry (P.fragariae) or Raspberry root rot (P.rubi). Genome sequencing and assembly
Number of Studies 1
Number of Projects 1
Number of Related Analysis Projects 0

 

 

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