ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0487901
Analysis Project Name Phytophthora fragariae ONT-3
Analysis Project Name Suffix
Analysis Project Type Genome Analysis (Isolate)
IMG Submission ID 261478
Completion Status Complete
IMG Completion Date 2022-02-15
PI
Analysis Project Description GOLD analysis project created from public NCBI/GenBank data.
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) SPAdes v. 3.6.2
IMG Decontamination
IMG Decontamination Method
Scaffold Count 13265
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 34214
Estimated Size 79064189
Sequencing Depth (MIGS-31.1) 45.18x
Genbank Anomalous Assembly No
Genbank Anomalous Reason
Annotation Pipeline IMG Annotation Pipeline v.5.1.1
Added By JGI automated process on 2021-03-15
Last Modified By JGI automated process on 2022-02-23
ORF Comparison Tools
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 2943674434
Genbank Accession
Genbank ID QXFX00000000 (GCA_009733005.1)
Release Date 2020-08-05
NCBI Genbank Version QXFX01
Genbank Release Date 2020-08-05
ANALYSIS PROJECT COMPOSITION
Study Isolates of two closely related phytophthora species causing either red core disease on Strawberry (P.fragariae) or Raspberry root rot (P.rubi). Genome sequencing and assembly
Number of Studies 1
Number of Projects 1
Number of Related Analysis Projects 0

 

 

  You are going to add the following user to your analysis project, project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your analysis project, project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the AP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Changing the AP visibility will also change downgrade visibility on the following items:

 

Do you want to continue with this visibility change?