ANALYSIS PROJECT INFORMATION | |||||||
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GOLD Analysis Project ID
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Ga0487884 |
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Analysis Project Name |
Phytophthora fragariae BC-23 |
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Analysis Project Name Suffix
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Analysis Project Type
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Genome Analysis (Isolate) |
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IMG Submission ID
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261464 | ||||||
Completion Status |
Complete |
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IMG Completion Date
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2022-05-02 |
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PI | Unknown | ||||||
Analysis Project Description
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GOLD analysis project created from public NCBI/GenBank data. |
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Visibility | Public | ||||||
ANALYSIS PROJECT METADATA | |||||||
Assembly Method
(MIGS-30)
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SPAdes v. 3.6.2 |
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IMG Decontamination
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IMG Decontamination Method
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|
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Scaffold Count
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13191 |
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Contig Count
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Gene Calling Method
(MIGS-32)
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Gene Count |
33962 |
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Estimated Size |
78255805 |
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Sequencing Depth
(MIGS-31.1)
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49.33x |
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Genbank Anomalous Assembly |
No |
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Genbank Anomalous Reason |
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Annotation Pipeline |
IMG Annotation Pipeline v.5.1.5 |
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Added By | JGI automated process on 2021-03-15 | ||||||
Last Modified By | JGI automated process on 2022-05-12 | ||||||
ORF Comparison Tools
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PROJECT EXTERNAL REFERENCES | |||||||
IMG Taxon ID
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2955428234 |
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Genbank Accession
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|
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Genbank Release Date |
2020-08-05 |
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ANALYSIS PROJECT COMPOSITION | |||||||
Study |
Isolates of two closely related phytophthora species causing either red core disease on Strawberry (P.fragariae) or Raspberry root rot (P.rubi). Genome sequencing and assembly |
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Number of Studies
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1 |
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Number of Projects
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1 |
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Number of Related Analysis Projects
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0 |
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