Studies
|
56,035 |
|
Biosamples
|
191,586 |
|
Sequencing Projects
|
515,842 |
|
Analysis Projects
|
381,622 |
| Organisms | 480,341 |
| ANALYSIS PROJECT INFORMATION | |
|---|---|
|
GOLD Analysis Project ID
|
Ga0485799 |
| Analysis Project Name |
Cand. Thiomargarita magnifica 75 |
|
Analysis Project Name Suffix
|
|
|
Analysis Project Type
|
Metagenome-Assembled Genome |
|
IMG Submission ID
|
250460 |
|
NCBI BioProject Accession
|
|
|
NCBI BioSample Accession
|
|
| Completion Status |
Complete |
|
IMG Completion Date
|
2021-03-20 |
| PI | Jean-Marie Volland |
|
Analysis Project Description
|
Thiomargarita from mangrove seawater in Basse-Terre, Guadeloupe |
| Visibility | Public |
| ANALYSIS PROJECT METADATA | |
| GOLD Organism Name |
Cand. Thiomargarita magnifica 75 |
|
NCBI Taxonomy ID
|
90372 |
| Phylum | PROTEOBACTERIA-GAMMA |
| Phylogeny Suggestion |
|
|
Genus
|
Thiomargarita |
| Species |
Cand. Thiomargarita magnifica |
| Strain |
75 |
| Domain |
BACTERIAL |
| NCBI Superkingdom |
Bacteria |
| NCBI Kingdom |
|
|
Number of tRNAs
|
|
|
tRNA Software
|
|
|
Completeness Strategy
|
Marker Gene |
|
Scaffold Count
|
2196 |
|
Contig Count
|
|
|
Binning Method
|
custom |
|
Binning Parameters
|
Codon Usage |
|
Reassembly Attempted
|
No |
|
MAG Coverage Software
|
Bbmap |
|
Gene Calling Method
(MIGS-32)
|
|
| Gene Count |
17160 |
| Estimated Size |
16475702 |
|
Sequencing Depth
(MIGS-31.1)
|
|
| Contamination Percentage |
3 |
| Completeness Percentage |
|
| Genbank Anomalous Assembly |
|
| Genbank Anomalous Reason |
|
| Annotation Pipeline |
IMG Annotation Pipeline v.5.0.23 |
| Added By | Galina Ovchinnikova on 2021-03-01 |
| Last Modified By | JGI automated process on 2021-11-27 |
|
ORF Comparison Tools
|
|
|
16S Recovered
|
No |
|
16S Recovery Software
|
|
| PROJECT EXTERNAL REFERENCES | |
|
IMG Taxon ID
|
2926625205 |
|
Genbank Accession
|
|
| Genbank Release Date |
|
| Genome Publication |
|
| ANALYSIS PROJECT COMPOSITION | |
| Study |
Thiomargarita filaments from Guadeloupe |
| Source Analysis Project |
Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Cand. Thiomargarita magnifica 75 |
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