ANALYSIS PROJECT INFORMATION | |
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GOLD Analysis Project ID
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Ga0485799 |
Analysis Project Name |
Cand. Thiomargarita magnifica 75 |
Analysis Project Name Suffix
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Analysis Project Type
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Metagenome-Assembled Genome |
IMG Submission ID
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250460 |
NCBI BioProject Accession
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NCBI BioSample Accession
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Completion Status |
Complete |
IMG Completion Date
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2021-03-20 |
PI | Jean-Marie Volland |
Analysis Project Description
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Thiomargarita from mangrove seawater in Basse-Terre, Guadeloupe |
Visibility | Public |
ANALYSIS PROJECT METADATA | |
GOLD Organism Name |
Cand. Thiomargarita magnifica 75 |
NCBI Taxonomy ID
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90372 |
Phylum | PROTEOBACTERIA-GAMMA |
Phylogeny Suggestion |
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Genus
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Thiomargarita |
Species |
Cand. Thiomargarita magnifica |
Strain |
75 |
Domain |
BACTERIAL |
NCBI Superkingdom |
Bacteria |
NCBI Kingdom |
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Number of tRNAs
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tRNA Software
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Completeness Strategy
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Marker Gene |
Scaffold Count
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2196 |
Contig Count
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|
Binning Method
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custom |
Binning Parameters
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Codon Usage |
Reassembly Attempted
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No |
MAG Coverage Software
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Bbmap |
Gene Calling Method
(MIGS-32)
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|
Gene Count |
17160 |
Estimated Size |
16475702 |
Sequencing Depth
(MIGS-31.1)
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Contamination Percentage |
3 |
Completeness Percentage |
|
Genbank Anomalous Assembly |
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Genbank Anomalous Reason |
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Annotation Pipeline |
IMG Annotation Pipeline v.5.0.23 |
Added By | Galina Ovchinnikova on 2021-03-01 |
Last Modified By | JGI automated process on 2021-11-27 |
ORF Comparison Tools
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16S Recovered
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No |
16S Recovery Software
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PROJECT EXTERNAL REFERENCES | |
IMG Taxon ID
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2926625205 |
Genbank Accession
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Genbank Release Date |
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Genome Publication |
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ANALYSIS PROJECT COMPOSITION | |
Study |
Thiomargarita filaments from Guadeloupe |
Source Analysis Project |
Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Cand. Thiomargarita magnifica 75 |
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