Studies
|
56,035 |
|
Biosamples
|
191,586 |
|
Sequencing Projects
|
515,842 |
|
Analysis Projects
|
381,622 |
| Organisms | 480,341 |
| ANALYSIS PROJECT INFORMATION | |
|---|---|
|
GOLD Analysis Project ID
|
Ga0484027 |
| Analysis Project Name |
Metatranscriptome of soil communities from Duke University greenhouse, North Carolina, United States - AA108 (Eukaryote Community Metatranscriptome) |
| Analysis Project Name Stem |
Metatranscriptome of soil communities from Duke University greenhouse, North Carolina, United States - AA108 |
|
Analysis Project Name Suffix
|
|
|
Analysis Project Type
|
Metatranscriptome Analysis |
|
IMG Submission ID
|
251113 |
| Completion Status |
Complete |
|
IMG Completion Date
|
2021-03-26 |
| PI | Jennifer Bhatnagar |
|
Analysis Project Description
|
|
| Visibility | Public |
| ANALYSIS PROJECT METADATA | |
|
Assembly Method
(MIGS-30)
|
megahit v. 2021-03-04 22:58:36 - MEGAHIT v1.2.9 |
|
Scaffold Count
|
148185 |
|
Contig Count
|
|
|
Gene Calling Method
(MIGS-32)
|
|
| Gene Count |
163600 |
| Estimated Size |
81585954 |
|
Sequencing Depth
(MIGS-31.1)
|
|
| Genbank Anomalous Assembly |
|
| Genbank Anomalous Reason |
|
| Annotation Pipeline |
IMG Annotation Pipeline v.5.0.23 |
| Added By | JGI automated process on 2021-01-22 |
| Last Modified By | JGI automated process on 2021-11-07 |
|
ORF Comparison Tools
|
|
| PROJECT EXTERNAL REFERENCES | |
|
IMG Taxon ID
|
3300043906 |
| IMG RNA-Seq ID |
|
|
Genbank Accession
|
|
| Genbank Release Date |
|
| SRA Runs |
|
| ANALYSIS PROJECT COMPOSITION | |
| Study |
Soil microbial communities from Duke University greenhouse, North Carolina, United States |
|
Number of Studies
|
1 |
|
Number of Biosamples
|
1 |
|
Number of Projects
|
1 |
|
Number of Related Analysis Projects
|
1 |
| JGI INFORMATION | |
|
JGI Data Utilization Status
|
Restricted |
|
ITS Analysis Project ID
|
1297310 (Portal) |
|
ITS Analysis Project Name
|
Suillus cothurnatus - Pinus taeda AA108 Metatranscriptome |
|
ITS Analysis Product Name
|
Eukaryote Community Metatranscriptome |
| ITS Version Number |
1 |
|
Library Names
|
HBYWC |
|
JGI Award DOI
|
10.46936/fics.proj.2017.49989/60006231 |
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