Studies
|
56,012 |
|
Biosamples
|
183,989 |
|
Sequencing Projects
|
508,093 |
|
Analysis Projects
|
381,521 |
| Organisms | 480,535 |
| ANALYSIS PROJECT INFORMATION | |
|---|---|
|
GOLD Analysis Project ID
|
Ga0480655 |
| Analysis Project Name |
Metatrasiptome of soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P24SSC2_191109_c (Metagenome Metatranscriptome) |
| Analysis Project Name Stem |
Metatrasiptome of soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P24SSC2_191109_c |
|
Analysis Project Name Suffix
|
|
|
Analysis Project Type
|
Metatranscriptome Analysis |
|
IMG Submission ID
|
252985 |
| Completion Status |
Complete |
|
IMG Completion Date
|
2021-05-10 |
| PI | Malak Tfaily |
|
Analysis Project Description
|
|
| Visibility | Public |
| ANALYSIS PROJECT METADATA | |
|
Assembly Method
(MIGS-30)
|
megahit v. 2021-04-22 07:39:01 - MEGAHIT v1.2.9 |
|
Scaffold Count
|
67759 |
|
Contig Count
|
|
|
Gene Calling Method
(MIGS-32)
|
|
| Gene Count |
73724 |
| Estimated Size |
29816956 |
|
Sequencing Depth
(MIGS-31.1)
|
|
| Genbank Anomalous Assembly |
|
| Genbank Anomalous Reason |
|
| Annotation Pipeline |
IMG Annotation Pipeline v.5.0.23 |
| Added By | JGI automated process on 2020-12-23 |
| Last Modified By | JGI automated process on 2021-11-07 |
|
ORF Comparison Tools
|
|
| PROJECT EXTERNAL REFERENCES | |
|
IMG Taxon ID
|
3300045464 |
| IMG RNA-Seq ID |
|
|
Genbank Accession
|
|
| Genbank Release Date |
|
| SRA Runs |
|
| ANALYSIS PROJECT COMPOSITION | |
| Study |
Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA |
|
Number of Studies
|
1 |
|
Number of Biosamples
|
1 |
|
Number of Projects
|
1 |
|
Number of Related Analysis Projects
|
2 |
| JGI INFORMATION | |
|
JGI Data Utilization Status
|
Restricted |
|
ITS Analysis Project ID
|
1292315 (Portal) |
|
ITS Analysis Project Name
|
UA_B2_WALD_metaT P24SSC2_191109_c Annotation |
|
ITS Analysis Product Name
|
Metagenome Metatranscriptome |
| ITS Version Number |
1 |
|
JGI Award DOI
|
10.46936/fics.proj.2019.50971/60000130 |
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