ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0455692
Analysis Project Name Prefix Soil microbial communities from sugarcane field in Santa Rita do Passa , Quatro, Sao Paulo, Brazil - SUG-D_3
Analysis Project Name Suffix
Analysis Project Type Metagenome Analysis
IMG Submission ID 242818
Completion Status Complete
IMG Completion Date 2020-11-14
PI
Analysis Project Description Assembly and annotation of public SRA data set.
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) Custom JGI assembly.
Scaffold Count 27041
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 32118
Estimated Size 11778237
Sequencing Depth (MIGS-31.1)
Annotation Pipeline IMG Annotation Pipeline v.5.0.20
Added By JGI automated process on 2020-10-13
Last Modified By JGI automated process on 2021-10-11
ORF Comparison Tools
16S Recovered
16S Recovery Software
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 3300042074
IMG Metagenome bin count 0
IMG Predicted viruses
Genbank Accession
Genbank Release Date
SRA Runs
 
SRA Run Id SRR12696341  (Link to NCBI )
ANALYSIS PROJECT COMPOSITION
Study Forest and sugarcane field soil microbial communities from Santa Rita do Passa , Quatro, Sao Paulo, Brazil
Number of Studies 1
Number of Biosamples 1
Number of Projects 1
Number of Related Analysis Projects 0
Derived Analysis Projects (DAP) 0

 

 

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