ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0454190
Analysis Project Name Variovorax sp. 2002
Analysis Project Name Suffix
Analysis Project Type Genome Analysis (Isolate)
IMG Submission ID 243679
Completion Status Complete
IMG Completion Date 2020-11-16
PI Daniel Schachtman
Analysis Project Description
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) spades v. 3.14.1
IMG Decontamination
IMG Decontamination Method
Scaffold Count 36
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 6548
Estimated Size 6819253
Sequencing Depth (MIGS-31.1) 144x
Genbank Anomalous Assembly
Genbank Anomalous Reason
Annotation Pipeline IMG Annotation Pipeline v.5.0.20
Added By JGI automated process on 2020-09-19
Last Modified By JGI automated process on 2022-06-14
ORF Comparison Tools
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 2904456579
Genbank Accession
Genbank ID JAFICG000000000
Genbank Release Date
ANALYSIS PROJECT COMPOSITION
Study Sorghum-associated microbial communities from plants grown in Nebraska, USA
Number of Studies 1
Number of Projects 1
Number of Related Analysis Projects 0
JGI INFORMATION
JGI Data Utilization Status Restricted
ITS Analysis Project ID 1275671 (Portal)
ITS Analysis Project Name Variovorax sp 2002
ITS Analysis Product Name Microbial Minimal Draft Isolate Genome
ITS Version Number 1
JGI Award DOI 10.46936/10.25585/60001066

 

 

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