ANALYSIS PROJECT INFORMATION
GOLD Analysis Project ID Ga0451331
Analysis Project Name Prefix Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA - R_b24.1
Analysis Project Name Suffix
Analysis Project Type Metagenome Analysis
IMG Submission ID 242789
Completion Status Complete
IMG Completion Date 2020-11-14
PI
PI Name
Analysis Project Description Assembly and annotation of public SRA data set.
Visibility Public
ANALYSIS PROJECT METADATA
Assembly Method (MIGS-30) Custom JGI assembly.
Scaffold Count 1056756
Contig Count
Gene Calling Method (MIGS-32)
Gene Count 927952
Estimated Size 917067312
Sequencing Depth (MIGS-31.1)
Annotation Pipeline IMG Annotation Pipeline v.5.0.20
Added By JGI automated process on 2020-07-31
Last Modified By JGI automated process on 2020-11-16
ORF Comparison Tools
16S Recovered
16S Recovery Software
PROJECT EXTERNAL REFERENCES
IMG Taxon ID 3300042042
Genbank Accession
Assembly Accession
Genbank Release Date
SRA Runs
 
SRA Run Id SRR8426922  (Link to NCBI )
ANALYSIS PROJECT COMPOSITION
Study Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA
Number of Studies 1
Number of Biosamples 1
Number of Projects 1
Number of Related Analysis Projects 1
Derived Analysis Projects (DAP) 0

 

 

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