Studies
|
54,052 |
|
Biosamples
|
174,371 |
|
Sequencing Projects
|
485,198 |
|
Analysis Projects
|
368,953 |
| Organisms | 468,054 |
| ANALYSIS PROJECT INFORMATION | |
|---|---|
|
GOLD Analysis Project ID
|
Ga0450589 |
| Analysis Project Name |
WPS-2 bacterium DeMMO6_30 |
|
Analysis Project Name Suffix
|
|
|
Analysis Project Type
|
Metagenome-Assembled Genome |
|
IMG Submission ID
|
236247 |
|
NCBI BioProject Accession
|
|
|
NCBI BioSample Accession
|
|
| Completion Status |
Complete |
|
IMG Completion Date
|
2020-07-31 |
| PI | Magdalena Osburn |
|
Analysis Project Description
|
Metagnenome assembled genome (MAG) binned from terrestrial subsurface fluid microbial community from Deep Mine Microbial Observatory in Lead, South Dakota, USA |
| Visibility | Public |
| ANALYSIS PROJECT METADATA | |
| GOLD Organism Name |
WPS-2 bacterium DeMMO6_30 |
|
NCBI Taxonomy ID
|
1798923 |
| Phylum | candidate division WPS-2 |
| Phylogeny Suggestion |
|
|
Genus
|
|
| Species |
WPS-2 bacterium DeMMO6_30 |
| Strain |
DeMMO6_30 |
| Domain |
BACTERIAL |
| NCBI Superkingdom |
Bacteria |
| NCBI Kingdom |
|
|
Number of tRNAs
|
|
|
tRNA Software
|
|
|
Completeness Strategy
|
|
|
Scaffold Count
|
513 |
|
Contig Count
|
|
|
Binning Method
|
MetaBAT2 |
|
Binning Parameters
|
|
|
Reassembly Attempted
|
|
|
MAG Coverage Software
|
|
|
Gene Calling Method
(MIGS-32)
|
|
| Gene Count |
3877 |
| Estimated Size |
4117885 |
|
Sequencing Depth
(MIGS-31.1)
|
|
| Contamination Percentage |
2.7 |
| Completeness Percentage |
83.4 |
| Genbank Anomalous Assembly |
|
| Genbank Anomalous Reason |
|
| Annotation Pipeline |
IMG Annotation Pipeline v.5.0.18 |
| Added By |
Caitlin Casar
on 2020-07-20 |
| Last Modified By |
JGI automated process
on 2021-08-18 |
|
ORF Comparison Tools
|
|
|
16S Recovered
|
|
|
16S Recovery Software
|
|
| PROJECT EXTERNAL REFERENCES | |
|
IMG Taxon ID
|
2880805847 |
|
Genbank Accession
|
|
| Genbank Release Date |
|
| Genome Publication |
|
| ANALYSIS PROJECT COMPOSITION | |
| Study |
Terrestrial subsurface fluid microbial community from Deep Mine Microbial Observatory in Lead, South Dakota, USA |
| Source Analysis Project |
Terrestrial subsurface fluid microbial community from Deep Mine Microbial Observatory in Lead, South Dakota, USA - DeMMO6 |
You are going to add the following user to your analysis project, project, biosample and study.
Contact Name/Email: Do you want to continue?
You are going to remove permissions for the following user to your analysis project, project, biosample and study.
Contact Name/Email: Do you want to continue?
Changing the AP visibility will also change visibility on the following items:
Do you want to continue with this visibility change?
Changing the AP visibility will also change downgrade visibility on the following items:
Do you want to continue with this visibility change?
